View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11942_low_43 (Length: 243)
Name: NF11942_low_43
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30698701 - 30698478
Alignment:
| Q |
1 |
agagatacaacaagaggaggaagaagagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30698701 |
agagatacaacaagaggaggaagaagagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattctcaatgagag |
30698602 |
T |
|
| Q |
101 |
gtaataatgccgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcact |
200 |
Q |
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|
|||||||||| |||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30698601 |
gtaataatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcact |
30698502 |
T |
|
| Q |
201 |
aaaagagaggcactatgaacaaag |
224 |
Q |
| |
|
|||||| ||||||||||||||||| |
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|
| T |
30698501 |
aaaagaaaggcactatgaacaaag |
30698478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30689815 - 30689592
Alignment:
| Q |
1 |
agagatacaacaagaggaggaagaagagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagag |
100 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30689815 |
agagacacaacaagaggaggaagaagggtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagag |
30689716 |
T |
|
| Q |
101 |
gtaataatgccgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcact |
200 |
Q |
| |
|
|| || |||| |||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
30689715 |
gttatgatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcact |
30689616 |
T |
|
| Q |
201 |
aaaagagaggcactatgaacaaag |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
30689615 |
aaaagagaggcactatgaacaaag |
30689592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30718858 - 30718635
Alignment:
| Q |
1 |
agagatacaacaagaggaggaagaagagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30718858 |
agagatacaacaagaggaggaagaagggtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagag |
30718759 |
T |
|
| Q |
101 |
gtaataatgccgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcact |
200 |
Q |
| |
|
|| || |||| |||||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
30718758 |
gttatgatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagcgattcaatatgattgcagagaagggtcttcacctgcacttgcact |
30718659 |
T |
|
| Q |
201 |
aaaagagaggcactatgaacaaag |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
30718658 |
aaaagagaggcactatgaacaaag |
30718635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 30656753 - 30656536
Alignment:
| Q |
7 |
acaacaagaggaggaagaagagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggtaata |
106 |
Q |
| |
|
|||||||| || || | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30656753 |
acaacaaggggtggcaaaagggtttggttaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggtaata |
30656654 |
T |
|
| Q |
107 |
atgccgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaaga |
206 |
Q |
| |
|
|||| |||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30656653 |
atgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaaga |
30656554 |
T |
|
| Q |
207 |
gaggcactatgaacaaag |
224 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
30656553 |
gaggcactatgaacaaag |
30656536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 30710584 - 30710370
Alignment:
| Q |
1 |
agagatacaacaagaggaggaagaagagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30710584 |
agagatacaacaagaggaggaagaagggtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagag |
30710485 |
T |
|
| Q |
101 |
gtaataatgccgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcact |
200 |
Q |
| |
|
|||||||||| | ||||| |||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
30710484 |
gtaataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcaagagattcaatatgattgcagaaaagggtcttcacctgcacttgcact |
30710385 |
T |
|
| Q |
201 |
aaaagagaggcacta |
215 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
30710384 |
caaagagagacacta |
30710370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30671920 - 30671697
Alignment:
| Q |
1 |
agagatacaacaagaggaggaagaagagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagag |
100 |
Q |
| |
|
||||| |||||||| || || | ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30671920 |
agagacacaacaaggggtggtaaaagggtttggcttggaacatttgacagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagag |
30671821 |
T |
|
| Q |
101 |
gtaataatgccgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcact |
200 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
30671820 |
gtaataatgccgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcact |
30671721 |
T |
|
| Q |
201 |
aaaagagaggcactatgaacaaag |
224 |
Q |
| |
|
|| ||||| |||| ||||||||| |
|
|
| T |
30671720 |
caaggagagacactgtgaacaaag |
30671697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 16252133 - 16252066
Alignment:
| Q |
35 |
taggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggt |
102 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||||||||||||||||| ||||||||||||||| |
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|
| T |
16252133 |
taggaacatttgatagtgctgaagcagcagcactagcttatgatcaagctgctttttcaatgagaggt |
16252066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 33042607 - 33042678
Alignment:
| Q |
31 |
tggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggt |
102 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||||||||| |||||||||||||| || ||||| ||||||||| |
|
|
| T |
33042607 |
tggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggt |
33042678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 30623952 - 30623894
Alignment:
| Q |
25 |
agagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagc |
83 |
Q |
| |
|
||||||||| | || |||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
30623952 |
agagtttggattggtacatttgatacagctgaagctgctgctttagcttatgatcaagc |
30623894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 56539165 - 56539332
Alignment:
| Q |
7 |
acaacaagaggaggaagaagagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggtaata |
106 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
56539165 |
acaacaagaaaaggaagaagtgtttggcttggaacatttgacagtgctgaggatgctgctttagcttacgatcaagctgcattttcattgagaggtaata |
56539264 |
T |
|
| Q |
107 |
atgccgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcaga |
174 |
Q |
| |
|
||| |||||||| |||||||| |||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
56539265 |
atgttgtgctcaatttttctgttcaaagggtcaaaggatatttgcaagagattcaatatgattgcaga |
56539332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 4420208 - 4420146
Alignment:
| Q |
24 |
aagagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgc |
86 |
Q |
| |
|
|||||||||||| || |||||||||| |||||| | |||||||||||||||||| ||||||| |
|
|
| T |
4420208 |
aagagtttggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgc |
4420146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 38337630 - 38337674
Alignment:
| Q |
35 |
taggaacatttgatagtgctgaagatgctgctttagcttatgatc |
79 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
38337630 |
taggaacatttgatactgcagaagatgctgctttagcctatgatc |
38337674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 6507712 - 6507664
Alignment:
| Q |
30 |
ttggctaggaacatttgatagtgctgaagatgctgctttagcttatgat |
78 |
Q |
| |
|
|||| ||||||||||||||| |||| |||| |||||||| ||||||||| |
|
|
| T |
6507712 |
ttggttaggaacatttgatactgctcaagaagctgcttttgcttatgat |
6507664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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