View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_low_46 (Length: 239)
Name: NF11942_low_46
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 3434276 - 3434497
Alignment:
| Q |
3 |
taaattaaaaacgagcacttaaaatttgcacttgatatatactaggttaaatttaattatttatttacctgcataaaaccgccatcacaaaagtcatagc |
102 |
Q |
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| T |
3434276 |
taaataaaaaacgagcacttaaaaattgcacttgatatatagtaggttaaatttaattatttatttacctgcataacaccgccatcacaaaagtcatagc |
3434375 |
T |
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| Q |
103 |
tggaagcatattgctcattgcacatgagaatgttggggatgttaatttcaacccagcatagtagaagttttgatctatcactggcctgtttagagtattt |
202 |
Q |
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| T |
3434376 |
tggaagcatgttgctcattgcacatgagaatgttggggatgttaatttcaacccagcatagtagaagttttgatctatcactggcctgtttagagcattt |
3434475 |
T |
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| Q |
203 |
aaatgaatataagttagcattt |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
3434476 |
aaatgaatataagttagcattt |
3434497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 3375313 - 3375451
Alignment:
| Q |
56 |
taattatttatttacctgcataaaaccgccatcacaaaagtcatagctggaagcatattgctcattgcacatgagaatgttggggatgttaatttcaacc |
155 |
Q |
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| T |
3375313 |
taattatttatttaccggcataaaacagccattgcaaaagtcattgctggaagaatattggtcattgcacatgagaaggttggagatgttaatttcaacc |
3375412 |
T |
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| Q |
156 |
cagcatagtagaagttttgatctatcactggcctgttta |
194 |
Q |
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| T |
3375413 |
cagcatagtataagttttgatctatcaccggcctgttta |
3375451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 67 - 191
Target Start/End: Complemental strand, 15571813 - 15571689
Alignment:
| Q |
67 |
ttacctgcataaaaccgccatcacaaaagtcatagctggaagcatattgctcattgcacatgagaatgttggggatgttaatttcaacccagcatagtag |
166 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||| | |||||||||||||| ||| |
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| T |
15571813 |
ttacctgcataaaactgccatcacaaaagtcatggctggaagcacgttgctcattgcacaagagaaggttggggatgtgagcttcaacccagcataatag |
15571714 |
T |
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| Q |
167 |
aagttttgatctatcactggcctgt |
191 |
Q |
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| T |
15571713 |
aaattttgatcaatcactggcctgt |
15571689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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