View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_low_53 (Length: 226)
Name: NF11942_low_53
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 5052873 - 5053067
Alignment:
| Q |
19 |
cctatatattaagaaaattttgtagtgaacttaatgcgtctaatttgtgtgaagacctttctaaaatactctttgtatattaatgtttttctggaacatc |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5052873 |
cctatatattaagaaaattttgtagtgaacttgatgcgtctaatttgtgtgaagacctttctaaaatactctttgtatattaatgtttttctggaacatc |
5052972 |
T |
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| Q |
119 |
ctttgcatagcagaactgtttcatttcccgccttactcaagaagtggagcatcgtgtgtgtaataatcatgcgtttaaagtaatcgatctgtgct |
213 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5052973 |
ctttgcatagcagaactgtttcatttcccaccttactcaagaagtggagcatcgtgtgtgtaataatcattcgtttaaagtaatcgatctgtgct |
5053067 |
T |
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