View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_low_6 (Length: 648)
Name: NF11942_low_6
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 52167053 - 52167618
Alignment:
| Q |
1 |
atcatttgcggcaaaggaaaatgatttcagatgtctttttgtttcttggtctgatgtttgggaattgatttgctgtctacttttgcactctcctgctatt |
100 |
Q |
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| T |
52167053 |
atcatttgcggcaaaggaaaatgatttcagatgtctttttgtttcttggtctgatgtttgggaattgatttgatgtctacttttgcactctcttgctatt |
52167152 |
T |
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| Q |
101 |
aagnnnnnnnnnnnatttcctactttcaataacgaatcgttcacattaacctcttattattcagaatccaataaaaaaccagtctttattgttgtgttgt |
200 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| |
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| T |
52167153 |
aatttttttttttt-tttcctactttcaataacaaatcgttcacattaacctcttattattctgaatgcaataaaaaaccagtatttattgttgtgttgt |
52167251 |
T |
|
| Q |
201 |
tttaacagtcataattgtgttgcgtcttataagaaatatgagaaaatagtaaacatgtttgtcttaacttaaggaaaatatatgtaatacccatggaacg |
300 |
Q |
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| T |
52167252 |
tttaacagtcacaattgtgttgcgtcttataagaaatatgagaaaatagtaaacatgtatgtcttaacttaaggaaaatatatgtaatatccatggaac- |
52167350 |
T |
|
| Q |
301 |
aacattaccttttaattcatnnnnnnn-catcttcataaaaattagttactactactaaaaaacactattttgctcctatttatggatttatgcgaaatt |
399 |
Q |
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| T |
52167351 |
---actaccttttaattcatcaaaaaaacgtcttcataaaaattagttact---actaaaaaacactattttgctcctatttatggatttatgcgaaatt |
52167444 |
T |
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| Q |
400 |
ctaaaataatgatggaagagtattttagaagatgcttggagatttatatcaaatgc---tattataatgtgtttgaaagaatcctaaaaaagtttgttaa |
496 |
Q |
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| T |
52167445 |
ctaaaataatgatggaagagtattttagaagatgcttggagatttatatcaaatgctagtattataatgtgtttgaaagaatcctaaaaaagtttgttaa |
52167544 |
T |
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| Q |
497 |
atttcaaactatttatataatgttctt--------gctgtcaaattaccaagttaaattttatttgatcaataa |
562 |
Q |
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| T |
52167545 |
atttcaaactatttatataatgttcttgaaaaatagctgtcaaattaccaagttaaatttaatttgatcaataa |
52167618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 598 - 635
Target Start/End: Original strand, 52167634 - 52167671
Alignment:
| Q |
598 |
tagctaattcagtgatgaagtcccagaagtatccattc |
635 |
Q |
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| T |
52167634 |
tagctaattcaatgatgaagtcccagaagtatccattc |
52167671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 43814033 - 43813989
Alignment:
| Q |
248 |
agtaaacatgtttgtctt-aacttaaggaaaatatatgtaatacc |
291 |
Q |
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| T |
43814033 |
agtaaacatgtttgtctttaacttaaggaaaatgtatgtaatacc |
43813989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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