View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_low_7 (Length: 607)
Name: NF11942_low_7
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 12 - 593
Target Start/End: Original strand, 30876650 - 30877235
Alignment:
| Q |
12 |
gagatgaatcatgaatttaacaatcacccttgaattcaatgtcatccattgtttaataatatgaatggcattatcacactatgccaagctaacatgttag |
111 |
Q |
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| T |
30876650 |
gagatgaatcatgaatttaacaatcacccttgaattcaatgtcatccattgtttaataatatgaatggcattatcacactatgccaagctaacatgttag |
30876749 |
T |
|
| Q |
112 |
ccgataataacatatagtcaatttcaatccaacaaaccgcataccatatccagacaagaatagccaacagctataacaaagttattaaatttcaatacag |
211 |
Q |
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| T |
30876750 |
ccgataataacatatagtcaatctcaatccaacaaaccgcataccatatccagacaagaatagccaacagctataacaaagttattaaatttcaatacag |
30876849 |
T |
|
| Q |
212 |
aagaaaatgcaaggttaggtttcctacaaaagatttgcagcagtttcattcgttcccggacggaaacagtaaactcggtaacctcgaaaagcaacataat |
311 |
Q |
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| T |
30876850 |
aagaaaatgcaaggttaggtttcctacaaaagatttgcagcagtttcattcgttcccggacggaaacagtaaactcggtaacctcgaaaagcaacataat |
30876949 |
T |
|
| Q |
312 |
cgcttgtttctatcgt----tcggtatcctgctcaagtaccatctaattcgggaccaatcctagcatccactagcagacccagttgaaacaagtgcaaag |
407 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30876950 |
cgcttgtttctatcttaaactcggtatcctgctcaagtaccatctaattcgggaccaatcctagcatccactagcagacccaattgaaacaagtgcaaag |
30877049 |
T |
|
| Q |
408 |
ccttgtatggactgacccaacactcggaggaatggaacctcatacctatagaggagcatatcccaagcctacaccaccgggtcaacctaacccacaacga |
507 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30877050 |
ccttgtatggactgacccaacactcagaggaatggaacctcatacctatagaggagcatatcccaagcctacaccaccgggtctacctaacccacaacga |
30877149 |
T |
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| Q |
508 |
aattgtttgatttcgtgttactaagatgtttcaaaaagtaataaaaaacatgaatctggttccttgcactttaaccaagtaaaaac |
593 |
Q |
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| T |
30877150 |
aattgtttgatttcgtgttactaagatgtttcaaaaagtaataaaaaacatgaatctggttctttgcactttaaccaagtaaaaac |
30877235 |
T |
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