View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_low_9 (Length: 532)
Name: NF11942_low_9
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 13 - 532
Target Start/End: Original strand, 43068694 - 43069238
Alignment:
| Q |
13 |
agatggtaacagtaacaaaaattggattgttaagcaagatgtggatgatgatgatgtaactgattcaatttcgaatggatctattacagaagattcaatg |
112 |
Q |
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| T |
43068694 |
agatggtaacagtaacaaaaattggattgttaagcaagatgtggatgatgatgatgtaactgattcaatttcgaatggatctattacagaagattcaatg |
43068793 |
T |
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| Q |
113 |
aattctatgtgttcatcttcttcatcagagttagatgatgatcaagaagtatcctcttcaacttctagtttgtcatcttcatcatcatcacattcaaatg |
212 |
Q |
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| T |
43068794 |
aattctatgtgttcatcttcttcatcagagttagatgatgatcaagaagcatcctcttcaacttctagtttgtcatcttcatcatcatcacattcaaatg |
43068893 |
T |
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| Q |
213 |
gtcccttatatgaactatcagaacttatgaaccatctccctttgaagtaagca----atatttctcatgcatgatgc---------------------at |
287 |
Q |
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| T |
43068894 |
gtcccttatatgaactatcagaacttatgaaccatctccctttgaagtaagcaatatatatttctcatgcatgatgcattttttttgctatatatataat |
43068993 |
T |
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| Q |
288 |
ttttatattctatatgaatattttgttgtactttaattcaattctatatatttattgtgacatttgcaggagaggattgtctatgttttatcaagggaag |
387 |
Q |
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| T |
43068994 |
ttttatattctatatgaatattttgttgtactttaattcaattctatatatttattgtgacatttgcaggagaggattgtctatgttttatcaagggaag |
43069093 |
T |
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| Q |
388 |
gcacaatcttttggttctttagctagagtgcagagtgtagaagatctttctaagaaattagagagaccaaattacagaaacaaaaagaaatcatgcaaaa |
487 |
Q |
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| T |
43069094 |
gcacaatcttttggttctttagctagagtgcagagtgtagaagatctttctaagaaattagagagaccaaattacagaaacaaaaagaaatcatgcaaaa |
43069193 |
T |
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| Q |
488 |
gctttggccggtacttgtgcactccaaaggcaacaatatcaaaaa |
532 |
Q |
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| T |
43069194 |
gctttggccggtacttgtgcactccaaaggcaacaatatcaaaaa |
43069238 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 34038268 - 34038218
Alignment:
| Q |
345 |
tgacatttgcaggagaggattgtctatgttttatcaagggaaggcacaatc |
395 |
Q |
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| T |
34038268 |
tgacttttgcaggagagggttgtcaatgttttatcaagggaaggctcaatc |
34038218 |
T |
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