View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11943_high_1 (Length: 860)
Name: NF11943_high_1
Description: NF11943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11943_high_1 |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 603
Target Start/End: Original strand, 17832391 - 17832983
Alignment:
| Q |
18 |
atttgattactagctgcagcattacttctaattaactcctagagctccgtatgaagtgnnnnnnnnnn------acgcatatgaagtgttaaatattatg |
111 |
Q |
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| T |
17832391 |
atttgattactagctgcaggattacttctaattaactcctagagctccctatgaagtgttttttttttttttttacgcatatgaagtgttaaatattatg |
17832490 |
T |
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| Q |
112 |
ttattagtttgtatgctattagcaaacccattttatcattacaacattttcaagttaataataaaatgtatagatttccattattggtgatggctttgat |
211 |
Q |
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| T |
17832491 |
ttattagtttgtatgctattagcaaacccattttatcattacaacattttcaagttaataataaaatgtatagatttccattattggtgatggctgtgat |
17832590 |
T |
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| Q |
212 |
aaatttataatattatgtttcctaatggacatgtataaataattgtctataatttgaagnnnnnnnnnnnnnn-ggaaatctgatgtggtttcctgggta |
310 |
Q |
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| T |
17832591 |
aaatttataatattatgcttcctaatggacatgtataaataattgtctataatttgaagtttttctctttttttggaaatctgatgtggtttcctgggta |
17832690 |
T |
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| Q |
311 |
ttttcagcatgtaaactgtttgcagcaaagttttctgatggtacaatacttcagcagagcataaaggcatgcattttgttcctagattttgatcaatctc |
410 |
Q |
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| T |
17832691 |
ttttcagcatgtaaactgtttgcagcaaagttttctgatggtacaatactgcagcagagcataaaggcatgcattttgttcctagattttgatcaatctc |
17832790 |
T |
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| Q |
411 |
tgcgtaatctttcatagtttctattaaaactattttcatactttttgtggtgttgtctttctttcttttgagttatgatgtcttgattccctcaatgcac |
510 |
Q |
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| T |
17832791 |
tgcgtaatctttcatagtttctattaaaactattttcatactttttgtggtgttgtctttctttcttttgagttatgatgtcttgaatccctcaatgcaa |
17832890 |
T |
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| Q |
511 |
gtgttattactatgaagtattgaagttctttacatttaagactccctgtttgatttagtatttatacaaattggatgtatgttgcctttaaga |
603 |
Q |
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| T |
17832891 |
gtgtgattacaatgaagtattggagttctttacatttaagactcactatttgatttagtatttatacaaattggatgtatgttgcctttaaga |
17832983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 627 - 850
Target Start/End: Original strand, 17833004 - 17833227
Alignment:
| Q |
627 |
aaataggaaggataaaccattaaagtccaataggctgtgtgatatctatatataatgtattttccttcatgtatttagctaccatgtaagtgttgttgac |
726 |
Q |
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| T |
17833004 |
aaataggaaggataaaccattaaagtccaataggctgtgtgatatctatatataatgtattttccttcatgtatttagctatcatgtaagtgttgctgac |
17833103 |
T |
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| Q |
727 |
atattcttccaatgaatgaaagtacttaaagtaaattcaagtttcaattttgactatattgtgttctggatttttattttcaaaacaaatagtaggattg |
826 |
Q |
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| T |
17833104 |
acattcttccaatgaatgaaagtacttaaagtaaattcaagtttcaattttgactatattgtgttttggatttttattttcaaaacaaatagtaggattg |
17833203 |
T |
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| Q |
827 |
tagttgtggcttatgttgcctttg |
850 |
Q |
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| T |
17833204 |
tagttgtggcttatgttgcctttg |
17833227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 566
Target Start/End: Original strand, 440 - 529
Alignment:
| Q |
477 |
tttgagttatgatgtcttgattccctcaatgcacgtgttattactatgaagtattgaagttctttacatttaagactccctgtttgattt |
566 |
Q |
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| T |
440 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacaattaactattgaagatttttaaatttaagactccctgtttcattt |
529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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