View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11943_high_11 (Length: 394)
Name: NF11943_high_11
Description: NF11943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11943_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 6 - 376
Target Start/End: Complemental strand, 110623 - 110253
Alignment:
| Q |
6 |
agcagcacagacaatcctgttatgtaaaagtgtgattacatcagaattcttacctaccaacatatctataattaaaatagcggattcacttgaaaagaga |
105 |
Q |
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||||||||| ||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
110623 |
agcagcacacacaatcctgttatgtgaaagtgtgatgacatcagaattgttacctaccaacatatctataattaaaatagcggtttcacttgaaaagaga |
110524 |
T |
|
| Q |
106 |
gaaaataaaaaccacataatatgccattataaatgtgtattatacttgcacagaataacaatcacgccacatgttataaacaagaaaaatattctactta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110523 |
gaaaataaaaaccacataatatgccattataaatgtgtattatacttgcacagaataacaatcacgccacatgttataaacaagaaaaatattctactta |
110424 |
T |
|
| Q |
206 |
aataactgtataactaagaaaaaccagtagaatagagttgcaaagaattgataagactttgtacataaacaattctaacttgaatcgcttcaaatatcta |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110423 |
aataactgtataactaagaaaaaccagtagaatagagttgcaaagaattgataagactttgtacataaacaattctaacttgaatcgcttcaaatatcta |
110324 |
T |
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| Q |
306 |
aaaacttcctggaaaggcggaaacccgtagaataaaggtgcagagaattgccgagccttttggagtaaagt |
376 |
Q |
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||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110323 |
aaagcttcccgaaaaggcggaaacccgtagaataaaggtgcagagaattgccgagccttttggagtaaagt |
110253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 376
Target Start/End: Original strand, 20647248 - 20647616
Alignment:
| Q |
6 |
agcagcacagacaatcctgttatgtaaaagtgtgattacatcagaattcttacctaccaacatatctataattaaaatagcggattcacttgaaaagaga |
105 |
Q |
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||||| ||| |||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20647248 |
agcagtacacacaatcatgttatgtaaaagtgtaatgacatcagaattcttacctaccaacatatctataattaaaatagcggtttcacttgaaaagaga |
20647347 |
T |
|
| Q |
106 |
gaaaataaaaaccacataatatgccattataaatgtgtattatacttgcacagaataacaatcacgccacatgttata------aacaagaaaaatattc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20647348 |
gaaaataaaaaccacataatatgccattataaatgtgtattatacttgcacagaataacaatcacgccacatgttataaatatcaacaagaaaaatattc |
20647447 |
T |
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| Q |
200 |
tacttaaataactgtataactaagaaaaaccagtagaatagagttgcaaagaattgataagactttgtacataaacaattctaacttgaatcgcttcaaa |
299 |
Q |
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| T |
20647448 |
tacttaa--------ataactaagaaaaaccagtagaatagagtttcaaagaattgataagactttgtacataaacaattctaacttgaatcgcttcaaa |
20647539 |
T |
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| Q |
300 |
tatctaaaaacttcctggaaaggcggaaacccgtagaataaaggtgcagagaattgccgagccttttggagtaaagt |
376 |
Q |
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| T |
20647540 |
tatctaaaagcttaccgaaaaggcggaaacccgtagaataaaggtgcagagaattgctgagccttttggagtaaagt |
20647616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 63661 - 63559
Alignment:
| Q |
60 |
taccaacatatctataattaaaatagcggattcacttgaaaagagagaaaataaaaa-ccac-ataatatgccattataaatgtgtattatacttgcaca |
157 |
Q |
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||||||||||| ||||| |||||||| || ||||||||||||| | |||||||||| | || ||||||||| |||||||| | ||||||||||||||| |
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| T |
63661 |
taccaacatatatataagtaaaatagtggtttcacttgaaaagcaacaaaataaaaatctactataatatgctattataaaggcttattatacttgcaca |
63562 |
T |
|
| Q |
158 |
gaa |
160 |
Q |
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||| |
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| T |
63561 |
gaa |
63559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 30367143 - 30367245
Alignment:
| Q |
264 |
ttgtacataaacaattctaacttgaatcgcttcaaatatctaaaaacttcctggaaaggcggaaacccgtagaataaaggtgcagagaattgccgagcct |
363 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||| | | ||||| |||||||| ||||||||||||||| | ||||| |
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| T |
30367143 |
ttgtacataaacaattctaactattatcgcttcaaatatctaaaagcttac--------caaaaaccagtagaatagaggtgcagagaattggcaagcct |
30367234 |
T |
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| Q |
364 |
tttggagtaaa |
374 |
Q |
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||||||||||| |
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| T |
30367235 |
tttggagtaaa |
30367245 |
T |
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