View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11943_high_8 (Length: 417)
Name: NF11943_high_8
Description: NF11943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11943_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 58 - 407
Target Start/End: Complemental strand, 1616979 - 1616631
Alignment:
| Q |
58 |
acctgaaaacactactgattctggtgaaaaagattgggttaaaggttccattttgctcataattgctacttttgcttgggcttctttcttcatccttcag |
157 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1616979 |
acctgaaaacactactggttctggtgaaaaggattgggttaaaggttccatttttctcataattgctacttttgcttgggcttctt-cttcatccttcag |
1616881 |
T |
|
| Q |
158 |
gtatgtatctgtttataaaattaagaaaatggagaataaaattgaaattatacattatttgaatattgaaattcttttttgtgattaatgcaggctgtga |
257 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| || | | ||||||||||| ||| ||||| |
|
|
| T |
1616880 |
gtatgtaactgtttataaaattaagaaagtgaagaataaaattgaaattatacattatttgaatattgatttttgtgtgtgtgattaatgaaggttgtga |
1616781 |
T |
|
| Q |
258 |
cattaaggaaatattcagctcaactctcactcacagccatagtgtgttccttgggcacacttcaatcaattgctgtgacttttgttatggagcataaccc |
357 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1616780 |
cattgaggaaatactcagctcaactctcactcacagccataatattttccttgggcacacttcaatcaattgatgtgacttttgttatggagcataaccc |
1616681 |
T |
|
| Q |
358 |
aaatgcttggagcattggttgggacatgaacctattagctgcagcctatg |
407 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1616680 |
aaatgcttggtgcattggttgggacatgaacttattagctgcagcctatg |
1616631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 58 - 407
Target Start/End: Complemental strand, 32571527 - 32571183
Alignment:
| Q |
58 |
acctgaaaacactactgattctggtgaaaaagattgggttaaaggttccattttgctcataattgctacttttgcttgggcttctttcttcatccttcag |
157 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
32571527 |
acctgaaaacactactggttctggtgaaaaggattgggttaaaggttccatttttctcataattgctacttttgctcgggcttctt-cttcatccttcag |
32571429 |
T |
|
| Q |
158 |
gtatgtatctgtttataaaattaagaaaatggagaataaaattgaaattatacattatttgaatattgaaattcttttttgtgattaatgcaggctgtga |
257 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || | ||||||||||| ||| | | |
|
|
| T |
32571428 |
gtatgtaactgtttataaaattaagaaagtggagaataaaattgaaattatacattatttgaatattga--tttttgtgtgtgattaatgaaggttc--a |
32571333 |
T |
|
| Q |
258 |
cattaaggaaatattcagctcaactctcactcacagccatagtgtgttccttgggcacacttcaatcaattgctgtgacttttgttatggagcataaccc |
357 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32571332 |
cattgaggaaatactcagctcaactctcactcacagccatagtgtgttccttgggcacacttcaatcaattgatgtgacttttgttatggagcataaccc |
32571233 |
T |
|
| Q |
358 |
aaatgcttggagcattggttgggacatgaacctattagctgcagcctatg |
407 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32571232 |
aaatgcttggtgcattggttgggacatgaacttattagctgcagcctatg |
32571183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University