View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11943_low_10 (Length: 406)

Name: NF11943_low_10
Description: NF11943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11943_low_10
NF11943_low_10
[»] chr7 (11 HSPs)
chr7 (20-213)||(39927331-39927523)
chr7 (239-402)||(22822537-22822700)
chr7 (239-402)||(22826840-22827003)
chr7 (238-386)||(29176543-29176692)
chr7 (248-386)||(29185532-29185671)
chr7 (238-392)||(346530-346687)
chr7 (239-392)||(340296-340452)
chr7 (239-362)||(8242541-8242665)
chr7 (239-362)||(8248110-8248234)
chr7 (239-392)||(25830394-25830547)
chr7 (239-338)||(2068782-2068882)
[»] chr8 (12 HSPs)
chr8 (239-402)||(37204235-37204398)
chr8 (239-402)||(37209712-37209875)
chr8 (239-404)||(21241172-21241335)
chr8 (239-404)||(21247676-21247839)
chr8 (239-404)||(27679620-27679783)
chr8 (236-404)||(27683402-27683568)
chr8 (239-386)||(30714226-30714374)
chr8 (239-386)||(30722003-30722151)
chr8 (238-386)||(30727611-30727760)
chr8 (239-344)||(26196896-26197002)
chr8 (248-392)||(24042863-24043004)
chr8 (238-331)||(26196996-26197090)
[»] chr4 (27 HSPs)
chr4 (237-404)||(42404641-42404806)
chr4 (239-404)||(12435342-12435505)
chr4 (239-404)||(42411107-42411270)
chr4 (239-386)||(910858-911005)
chr4 (239-404)||(29333637-29333800)
chr4 (239-404)||(917283-917447)
chr4 (237-386)||(30679803-30679953)
chr4 (239-392)||(18890002-18890156)
chr4 (239-386)||(30673710-30673858)
chr4 (235-386)||(1913742-1913896)
chr4 (239-386)||(23187963-23188111)
chr4 (239-386)||(25687569-25687717)
chr4 (239-386)||(1874003-1874151)
chr4 (239-386)||(12659200-12659350)
chr4 (241-386)||(25697337-25697483)
chr4 (239-388)||(16325725-16325877)
chr4 (239-388)||(16334769-16334921)
chr4 (239-386)||(23200526-23200674)
chr4 (241-386)||(12439303-12439449)
chr4 (239-358)||(12428922-12429042)
chr4 (243-386)||(12665718-12665859)
chr4 (235-393)||(55325475-55325636)
chr4 (239-360)||(4393790-4393912)
chr4 (239-390)||(48305348-48305499)
chr4 (237-362)||(33360217-33360343)
chr4 (239-299)||(42119835-42119895)
chr4 (238-270)||(29330090-29330122)
[»] chr1 (17 HSPs)
chr1 (239-404)||(38984912-38985075)
chr1 (239-404)||(38991099-38991262)
chr1 (239-404)||(28519275-28519438)
chr1 (239-404)||(28512812-28512973)
chr1 (238-386)||(18540716-18540865)
chr1 (239-386)||(18534990-18535138)
chr1 (239-386)||(31092958-31093106)
chr1 (239-386)||(31099564-31099712)
chr1 (239-386)||(11660177-11660325)
chr1 (238-386)||(27347176-27347327)
chr1 (236-390)||(7876088-7876243)
chr1 (236-386)||(11654017-11654168)
chr1 (236-386)||(35625261-35625414)
chr1 (239-386)||(37356742-37356892)
chr1 (239-386)||(37365160-37365310)
chr1 (236-386)||(38736036-38736189)
chr1 (237-386)||(39492738-39492888)
[»] chr6 (4 HSPs)
chr6 (239-404)||(23427482-23427645)
chr6 (235-404)||(23421632-23421799)
chr6 (238-386)||(18738572-18738721)
chr6 (238-392)||(33660896-33661053)
[»] chr3 (12 HSPs)
chr3 (239-392)||(2978240-2978394)
chr3 (239-392)||(2982184-2982338)
chr3 (239-386)||(21453160-21453310)
chr3 (239-386)||(21458334-21458484)
chr3 (237-392)||(21877162-21877320)
chr3 (239-386)||(15752508-15752658)
chr3 (239-386)||(15758301-15758451)
chr3 (239-392)||(21883424-21883580)
chr3 (238-386)||(49491230-49491381)
chr3 (239-386)||(49486733-49486883)
chr3 (238-386)||(21473103-21473254)
chr3 (239-386)||(21477492-21477641)
[»] chr2 (11 HSPs)
chr2 (239-386)||(25445070-25445218)
chr2 (239-386)||(19437548-19437696)
chr2 (238-386)||(25454728-25454877)
chr2 (239-386)||(19443123-19443271)
chr2 (239-386)||(43293147-43293297)
chr2 (239-387)||(24053296-24053447)
chr2 (239-386)||(43287402-43287552)
chr2 (239-386)||(24056633-24056782)
chr2 (239-360)||(31437151-31437273)
chr2 (239-360)||(31433045-31433167)
chr2 (303-360)||(8872305-8872362)
[»] chr5 (10 HSPs)
chr5 (239-386)||(23058965-23059113)
chr5 (239-386)||(23053390-23053538)
chr5 (239-395)||(21171189-21171346)
chr5 (239-386)||(35264551-35264699)
chr5 (239-386)||(35270292-35270440)
chr5 (239-392)||(25365397-25365553)
chr5 (239-386)||(16675564-16675709)
chr5 (239-386)||(39653938-39654086)
chr5 (239-395)||(21178050-21178209)
chr5 (325-357)||(2135850-2135882)
[»] scaffold0102 (1 HSPs)
scaffold0102 (239-386)||(14025-14173)
[»] scaffold0014 (2 HSPs)
scaffold0014 (239-386)||(111875-112025)
scaffold0014 (239-295)||(106062-106118)
[»] scaffold0591 (1 HSPs)
scaffold0591 (239-392)||(9323-9478)
[»] scaffold0079 (1 HSPs)
scaffold0079 (239-388)||(57939-58091)
[»] scaffold0258 (1 HSPs)
scaffold0258 (241-388)||(6287-6435)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 39927523 - 39927331
Alignment:
Q  20 gattcgatatcatttaaaaagaagaagaagtcattgtttaatcattagttcctctaagatttcaagattgatggattgaataagtgttttaccttattct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39927523 gattcgatatcatttaaaaagaagaagaagtcattgtttaatcattagttcctctaagatttcaagattgatggattgaataagtgttttaccttattct 39927424  T
Q  120 gtgtaacatgttggcagagggcacccaacctctatgccatcgcatcgaaacctttgctttaattttctaaaaattaaattgcatattaatatta 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39927423 gtgtaacatgtt-gcagagggcacccaacctctatgccatcgcatcgaaacctttgctttaattttctaaaaattaaattgcatattaatatta 39927331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 239 - 402
Target Start/End: Original strand, 22822537 - 22822700
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22822537 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 22822636  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctc 402  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  22822637 aatagagctcatttgtaacattgatacacacatcagtgaataagaatatttctctcttcttctc 22822700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 239 - 402
Target Start/End: Original strand, 22826840 - 22827003
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22826840 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 22826939  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctc 402  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  22826940 aatagagctcatttgtaacattgatacacacatcagtgaataagaatatttctctcttcttctc 22827003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 238 - 386
Target Start/End: Original strand, 29176543 - 29176692
Alignment:
Q  238 ttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttcccta 336  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  29176543 ttgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggtcatactactaggttattgggcttagttcataagctactctatttcccta 29176642  T
Q  337 taaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||    
T  29176643 taaatagagctcatttgtaacattgatacacacattagtgaataagaata 29176692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 248 - 386
Target Start/End: Original strand, 29185532 - 29185671
Alignment:
Q  248 tattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctataaatagagc 346  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  29185532 tattaatattggatgtccaaatagaaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctatttccctataaatagagc 29185631  T
Q  347 tcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  29185632 tcatttgtaacattgatacacacattagtgaataagaata 29185671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 238 - 392
Target Start/End: Complemental strand, 346687 - 346530
Alignment:
Q  238 ttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttcccta 336  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||| || |||||||||||||||| ||| ||||||||||| ||||||||||||| | ||    
T  346687 ttgttataaatattaatagcggatgtccaaatagcaaatgtgttattgagccatactactaggttattgagcttagttcataagctactctattttctta 346588  T
Q  337 taaatagagctcatttgtaacatt--gatacacacatcggtgaataagaatatttctc 392  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||| |||||||||||    
T  346587 taaatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttctc 346530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 340452 - 340296
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    |||||||||||||||||  ||||||| ||||| ||||||||||| || |||||||||||||||| ||||||||||||||| ||||||||||||| | |||    
T  340452 tgttataaatattaatagcggatgtccaaataacaaatgtgttattgagccatactactaggttattgggcttagttcataagctactctattttcttat 340353  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaatatttctc 392  Q
    |||||||||||||||||||||||  |||||||||||| ||||||| |||||||||||    
T  340352 aaatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttctc 340296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 8242541 - 8242665
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |||||| || || |||||| ||||| |||||||||||||||||||    
T  8242541 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggtcatattactagattattaggcttaattcataagctactctatttccctat 8242640  T
Q  338 aaatagagctcatttgtaacattga 362  Q
    |||||||||||||||||||||||||    
T  8242641 aaatagagctcatttgtaacattga 8242665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 8248110 - 8248234
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| || || |||||| ||||| ||||||||||||| |||||    
T  8248110 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattactagattattaggcttaattcataagctactctattttcctat 8248209  T
Q  338 aaatagagctcatttgtaacattga 362  Q
    |||||||||||||||||||||||||    
T  8248210 aaatagagctcatttgtaacattga 8248234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 25830547 - 25830394
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| |||||||||||  |||| ||||| || ||||||| || ||||||||||| ||| ||||| | |||||||||||    
T  25830547 tgttataaatattaatagtggatgtccaaatagcaaattggttaatgggctat-ctactagattgttgggcttagtccataagctattatatttccctat 25830449  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctc 392  Q
    ||||||||||| |||||| ||||||   ||||| | ||||||||||||| |||||    
T  25830448 aaatagagctcctttgtagcattgagggacacaccagtgaataagaatacttctc 25830394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 338
Target Start/End: Complemental strand, 2068882 - 2068782
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggt-tttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| |||||||||||| |||| | ||| |||||| ||| |  ||||||||||| ||| ||||| | |||||||||||    
T  2068882 tgttataaatattaatagtggatgtccaaatagcaaatgagttaataggctatactaatagatgattgggcttagtccataagctattatatttccctat 2068783  T
Q  338 a 338  Q
    |    
T  2068782 a 2068782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 239 - 402
Target Start/End: Original strand, 37204235 - 37204398
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37204235 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 37204334  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctc 402  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  37204335 aatagagctcatttgtaacattgatacacacatcagtgaataagaatatttctctcttcttctc 37204398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 239 - 402
Target Start/End: Original strand, 37209712 - 37209875
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37209712 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 37209811  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctc 402  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  37209812 aatagagctcatttgtaacattgatacacacatcagtgaataagaatatttctctcttcttctc 37209875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 239 - 404
Target Start/End: Original strand, 21241172 - 21241335
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21241172 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtggaccatactactaggttttgggcttagttcataagctactctatttccctata 21241271  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctcct 404  Q
    |||||||||||||||||||||||||||| ||    |||||||||||||||||||||| ||||||||    
T  21241272 aatagagctcatttgtaacattgatacagac--tagtgaataagaatatttctctcttcttctcct 21241335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 239 - 404
Target Start/End: Original strand, 21247676 - 21247839
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21247676 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtggaccatactactaggttttgggcttagttcataagctactctatttccctata 21247775  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctcct 404  Q
    |||||||||||||||||||||||||||| ||    |||||||||||||||||||||| ||||||||    
T  21247776 aatagagctcatttgtaacattgatacagac--tagtgaataagaatatttctctcttcttctcct 21247839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 239 - 404
Target Start/End: Complemental strand, 27679783 - 27679620
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27679783 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcataagctactctatttccctata 27679684  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctcct 404  Q
    ||||||||| ||||||||||||||||   ||    |||||||||||||||||||||| ||||||||    
T  27679683 aatagagctaatttgtaacattgatatggac--tagtgaataagaatatttctctcttcttctcct 27679620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 236 - 404
Target Start/End: Complemental strand, 27683568 - 27683402
Alignment:
Q  236 atttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccct 335  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||    
T  27683568 atttgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggttttgggtttagttcataagttactctatttccct 27683469  T
Q  336 ataaatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctcct 404  Q
    |||||||||||||||||||||||||||||   ||    |||||||||||||||||||||| ||||||||    
T  27683468 ataaatagagctcatttgtaacattgatatggac--tagtgaataagaatatttctctcttcttctcct 27683402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 30714374 - 30714226
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  30714374 tgttataaatattaatagtggatgtccaaatagcaattgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 30714275  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  30714274 aaatagagctcatttgtaacattgatatacacatcagtgaataagaata 30714226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 30722151 - 30722003
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  30722151 tgttataaatattaatagtggatgtccaaatagcaattgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 30722052  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  30722051 aaatagagctcatttgtaacattgatatacacatcagtgaataagaata 30722003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 238 - 386
Target Start/End: Complemental strand, 30727760 - 30727611
Alignment:
Q  238 ttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttcccta 336  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||| ||||    
T  30727760 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactatattttccta 30727661  T
Q  337 taaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
     ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  30727660 aaaatagagctcatttgtaacattgatatacacatcagtgaataagaata 30727611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 239 - 344
Target Start/End: Original strand, 26196896 - 26197002
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||  |||||||||||  |||  |||||||||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  26196896 tgttataaatattaatagtggatgttcaaatagcaaataggtttatgggccatactaataggttattgggcttagttcataagctactctatttccctat 26196995  T
Q  338 aaataga 344  Q
    |||||||    
T  26196996 aaataga 26197002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 248 - 392
Target Start/End: Complemental strand, 24043004 - 24042863
Alignment:
Q  248 tattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctataaatagagc 346  Q
    |||||||  ||| |||| ||||| ||||||||||| ||||||||| || ||| || ||||||||||||||| |||||||||||||| |||||||||||||    
T  24043004 tattaattgtgggtgtccaaataacaaatgtgttaatgggccataatattagattattgggcttagttcataagctactctatttctctataaatagagc 24042905  T
Q  347 tcatttgtaacattgatacacacatcggtgaataagaatatttctc 392  Q
    |||| ||||||||| | | |||||    ||||||||||||||||||    
T  24042904 tcatatgtaacattaaaatacaca----tgaataagaatatttctc 24042863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 26197090 - 26196996
Alignment:
Q  238 ttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctattt 331  Q
    |||||||||||||||||| |||||||| |||||||||||  |||  | |||||||||| |||||| ||||||||||||||| ||||  |||||||    
T  26197090 ttgttataaatattaatagtggatgtccaaatagcaaataggtttataggccatactaataggttattgggcttagttcataagcttttctattt 26196996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 237 - 404
Target Start/End: Original strand, 42404641 - 42404806
Alignment:
Q  237 tttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttcccta 336  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42404641 tttgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcataagctactctatttcccta 42404740  T
Q  337 taaatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctcct 404  Q
    |||||||||||||||||||||||||||||||||    |||||||||||||||||||||| ||||||||    
T  42404741 taaatagagctcatttgtaacattgatacacac--tagtgaataagaatatttctctcttcttctcct 42404806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 239 - 404
Target Start/End: Complemental strand, 12435505 - 12435342
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12435505 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcataagctactctatttccctata 12435406  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctcct 404  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||| ||||||||    
T  12435405 aatagagctcatttgtaacattgatacacac--tagtgaataagaatatttctctcttcttctcct 12435342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 239 - 404
Target Start/End: Original strand, 42411107 - 42411270
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42411107 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcataagctactctatttccctata 42411206  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctcct 404  Q
    |||||||||||||||||||||||||||| ||    |||||||||||||||||||||| ||||||||    
T  42411207 aatagagctcatttgtaacattgatacaaac--tagtgaataagaatatttctctcttcttctcct 42411270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 911005 - 910858
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  911005 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcataagctactctattttcctata 910906  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  910905 aatagagctcatttgtaacattgatacacagatcagtgaataagaata 910858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 239 - 404
Target Start/End: Original strand, 29333637 - 29333800
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  29333637 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcataacctactctatttccctata 29333736  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctcct 404  Q
    |||| ||||||||||||||||||||||||||    |||||||||||||||||||||| ||||||||    
T  29333737 aataaagctcatttgtaacattgatacacac--tagtgaataagaatatttctctcttcttctcct 29333800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 239 - 404
Target Start/End: Complemental strand, 917447 - 917283
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  917447 tgttataaatattaatattggatgtctaaatagcaaatatgttagtgggctatactactaggtttcgggcttagttcataagctactctatttccctata 917348  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatattt-ctctctgcttctcct 404  Q
    |||||||||||||||||||||||||||||||    |||||||| ||||||| |||||| ||||||||    
T  917347 aatagagctcatttgtaacattgatacacac--tagtgaataaaaatatttcctctcttcttctcct 917283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 237 - 386
Target Start/End: Complemental strand, 30679953 - 30679803
Alignment:
Q  237 tttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccct 335  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  30679953 tttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctatttccct 30679854  T
Q  336 ataaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||||||| | ||||  |||||||||||||    
T  30679853 ataaatagagctcatttgtaacattgataaatacattagtgaataagaata 30679803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 239 - 392
Target Start/End: Original strand, 18890002 - 18890156
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||||||||||||||||    
T  18890002 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataagctactctatttccctat 18890101  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctc 392  Q
    ||||||| ||||||||||||||||||| ||||||  |||||||||||||||||||    
T  18890102 aaatagaactcatttgtaacattgatatacacattagtgaataagaatatttctc 18890156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 30673858 - 30673710
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  30673858 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctatttccctat 30673759  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    |||||||| |||||||||||||||||| | ||||  |||||||||||||    
T  30673758 aaatagagttcatttgtaacattgataaatacattagtgaataagaata 30673710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 235 - 386
Target Start/End: Complemental strand, 1913896 - 1913742
Alignment:
Q  235 tatttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttcc 333  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||  ||||||||||||||    
T  1913896 tatttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataggctactctatttcc 1913797  T
Q  334 ctataaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  1913796 ctataaatagagctcatttgtaacattgagatacacacatcagtgaataagaata 1913742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 239 - 386
Target Start/End: Original strand, 23187963 - 23188111
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| || ||| ||||||||||| |||||||||||||||||||    
T  23187963 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtggaccatactactagtttattgagcttagttcataagctactctatttccctat 23188062  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||||| ||| ||  |||||||||||||    
T  23188063 aaatagagctcatttgtaacattgatagacagataagtgaataagaata 23188111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 25687717 - 25687569
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||||||||||||||    
T  25687717 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactagtttattgggcttaattcataagctactctatttccctat 25687618  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||| ||||||||||||||||||||||| | | ||| |||||||||||||    
T  25687617 aaacagagctcatttgtaacattgatatatagatcagtgaataagaata 25687569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 1874151 - 1874003
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| || ||| ||||||||| |||||  ||||||||||||||||||    
T  1874151 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattatgttattgggcttaattcataggctactctatttccctat 1874052  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||| ||||||||||||||||||| | ||||||| |||||||||||||    
T  1874051 aaatatagctcatttgtaacattgagatacacatcagtgaataagaata 1874003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 12659350 - 12659200
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||    
T  12659350 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 12659251  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||| |  |||||||||||  |||||||||||||    
T  12659250 aaatagagctcatttgtaacactgagatacacacattagtgaataagaata 12659200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 241 - 386
Target Start/End: Complemental strand, 25697483 - 25697337
Alignment:
Q  241 ttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctataa 339  Q
    ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| || |||| |||| ||||| |||||||||||||||||||||    
T  25697483 ttataaatattaatagtggatatccaaatagcaaatgtgttagtgggccatactactagtttattggacttaattcataagctactctatttccctataa 25697384  T
Q  340 atagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||| | | ||| |||||||||||||    
T  25697383 atagagctcatttgtaacattgatatatagatcagtgaataagaata 25697337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 239 - 388
Target Start/End: Complemental strand, 16325877 - 16325725
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||| | |||    
T  16325877 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactatattttcttat 16325778  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaatatt 388  Q
    |||||||||||||||||||||||  |||||||||||   ||||||||||||||    
T  16325777 aaatagagctcatttgtaacattgagatacacacattattgaataagaatatt 16325725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 239 - 388
Target Start/End: Complemental strand, 16334921 - 16334769
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||| | |||    
T  16334921 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactatattttcttat 16334822  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaatatt 388  Q
    |||||||||||||||||||||||  |||||||||||   ||||||||||||||    
T  16334821 aaatagagctcatttgtaacattgagatacacacattattgaataagaatatt 16334769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 239 - 386
Target Start/End: Original strand, 23200526 - 23200674
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| || ||||||| ||||||||    
T  23200526 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactagtttattgggcttagttcataagttactctacttccctat 23200625  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||| ||||||||||||||||||| ||| ||| | ||||| |||||    
T  23200626 aaatagaactcatttgtaacattgatagacagatcagcgaatacgaata 23200674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 241 - 386
Target Start/End: Complemental strand, 12439449 - 12439303
Alignment:
Q  241 ttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctataa 339  Q
    ||||||||||||||| |||||||| |||||||||||  |||  |||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||    
T  12439449 ttataaatattaatagtggatgtccaaatagcaaataggtttatgggccatactaataggttattgggcttagttcataagctactctatttccctataa 12439350  T
Q  340 atagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||| ||||||||||||| |||   | | |||||||||||||||||    
T  12439349 atagaactcatttgtaacagtgagtgagagatcggtgaataagaata 12439303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 239 - 358
Target Start/End: Complemental strand, 12429042 - 12428922
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||| |||||||  |||  |||||||||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  12429042 tgttataaatattaatagtggatgtccaaagagcaaataggtttatgggccatactaataggttattgggcttagttcataagctactctatttccctat 12428943  T
Q  338 aaatagagctcatttgtaaca 358  Q
    ||||||| |||||||||||||    
T  12428942 aaatagaactcatttgtaaca 12428922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 386
Target Start/End: Complemental strand, 12665859 - 12665718
Alignment:
Q  243 ataaatattaatattggatgt---ctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctataa 339  Q
    ||||||||||||| |||||||   | |||||  |||||||||| ||||||||||||||||||| | |||||||||||| ||||||||||||| | |||||    
T  12665859 ataaatattaatagtggatgttgtccaaataataaatgtgttattgggccatactactaggttattggcttagttcataagctactctattttcttataa 12665760  T
Q  340 atagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||     |||||||||||  |||||||||||||    
T  12665759 atagagctcatttgta-----gatacacacattagtgaataagaata 12665718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 393
Target Start/End: Original strand, 55325475 - 55325636
Alignment:
Q  235 tatttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactacta---ggtt-ttgggcttagttcattagctactctatt 330  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||||||||| |||| |||||   |||| |||  |||||||||| | ||||| ||||    
T  55325475 tatttgttataaatattaataatagatgtccaaatagcaaatgtgttagtgggtcataatactattaggttattgaacttagttcataaactactttatt 55325574  T
Q  331 tccctataaatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctct 393  Q
    |||||||||||| ||||||||||| ||||||| | | ||||| |||||||| |||| ||||||    
T  55325575 tccctataaataaagctcatttgttacattgaga-aaacatcagtgaataataatacttctct 55325636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 239 - 360
Target Start/End: Complemental strand, 4393912 - 4393790
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||  | | ||||||||||| || || || ||| ||||| ||||||| |||||||||||    
T  4393912 tgttataaatattaatagtggatgtctaaataacaaatgggttaacgagtcatactactagattattaggtttaattcataagctactttatttccctat 4393813  T
Q  338 aaatagagctcatttgtaacatt 360  Q
    ||||| |||||||||||||||||    
T  4393812 aaataaagctcatttgtaacatt 4393790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 390
Target Start/End: Complemental strand, 48305499 - 48305348
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||| | |||||||| |||||||||| | |||| |||||||||| ||||| || ||| |||||||| ||  ||||||||||||||||||    
T  48305499 tgttataaatattaaaagtggatgtccaaatagcaaacgcgttaatgggccataccactagattattgagcttagtttatatgctactctatttccctat 48305400  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaatatttc 390  Q
    |||||||| ||| |||||||||| |     ||||| |||||||||||||||||    
T  48305399 aaatagagttca-ttgtaacattcagtagtacatcagtgaataagaatatttc 48305348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 237 - 362
Target Start/End: Complemental strand, 33360343 - 33360217
Alignment:
Q  237 tttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccct 335  Q
    ||||||||||||||||| | || ||||  ||||||||||||||||||| | | |||||| || ||| ||| | |||||| || ||||||||||||| | |    
T  33360343 tttgttataaatattaagagtgaatgtacaaatagcaaatgtgttagttgactatactattaagttattgagtttagtttataagctactctattttctt 33360244  T
Q  336 ataaatagagctcatttgtaacattga 362  Q
    |||||||||||||||| ||||||||||    
T  33360243 ataaatagagctcattcgtaacattga 33360217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 42119895 - 42119835
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactag 299  Q
    ||||||||||||||||| |||||||| ||||||||||||  ||| |||| |||||||||||    
T  42119895 tgttataaatattaatagtggatgtccaaatagcaaatggattaatgggtcatactactag 42119835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 29330090 - 29330122
Alignment:
Q  238 ttgttataaatattaatattggatgtctaaata 270  Q
    ||||||||||||||||||||||||||| |||||    
T  29330090 ttgttataaatattaatattggatgtccaaata 29330122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 239 - 404
Target Start/End: Original strand, 38984912 - 38985075
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38984912 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcataagctactctatttccctata 38985011  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctcct 404  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||| ||||||||    
T  38985012 aatagagctcatttgtaacattgatacacac--tagtgaataagaatatttctctcttcttctcct 38985075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 239 - 404
Target Start/End: Original strand, 38991099 - 38991262
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38991099 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcataagctactctatttccctata 38991198  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctcct 404  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||| ||||||||    
T  38991199 aatagagctcatttgtaacattgatacacac--tagtgaataagaatatttctctcttcttctcct 38991262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 239 - 404
Target Start/End: Original strand, 28519275 - 28519438
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28519275 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcataagctactctatttccctata 28519374  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctcct 404  Q
    |||||||||||||||||||||||| ||||||    |||||||| ||||||||||||| ||||||||    
T  28519375 aatagagctcatttgtaacattgagacacac--tagtgaataaaaatatttctctcttcttctcct 28519438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 239 - 404
Target Start/End: Original strand, 28512812 - 28512973
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28512812 tgttataaatattaatattggatgtccaaa--gcaaatgtgttagtgggccatactactaggttttgggcttagttcataagctactctatttccctata 28512909  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctcct 404  Q
    |||||||||||||||||||||||| ||||||    |||||||||||||||||||||| ||||||||    
T  28512910 aatagagctcatttgtaacattgagacacac--tagtgaataagaatatttctctcttcttctcct 28512973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 238 - 386
Target Start/End: Complemental strand, 18540865 - 18540716
Alignment:
Q  238 ttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttcccta 336  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  18540865 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctattttccta 18540766  T
Q  337 taaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||||||| ||| ||| |||||||||||||    
T  18540765 taaatagagctcatttgtaacattgatatacagatcagtgaataagaata 18540716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 18535138 - 18534990
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||    
T  18535138 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctattttcctat 18535039  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||||||    
T  18535038 aaatagagctcatttgtaacattgatatacagatcagtgaataagaata 18534990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 31093106 - 31092958
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  31093106 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 31093007  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||||| | ||||| |||||||| ||||    
T  31093006 aaatagagctcatttgtaacattgatatatacatcagtgaataaaaata 31092958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 31099712 - 31099564
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  31099712 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 31099613  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||||| | ||||| |||||||| ||||    
T  31099612 aaatagagctcatttgtaacattgatatatacatcagtgaataaaaata 31099564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 239 - 386
Target Start/End: Original strand, 11660177 - 11660325
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||||||||    
T  11660177 tgttataaatattaatagtggatgtccaagtaacaaatgtgttagtgggccatactactatgttattgggcttaattcataagctactctatttccctat 11660276  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  11660277 aaatagagctcatttgtaacattgatatacacatcagtgaataagaata 11660325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 238 - 386
Target Start/End: Complemental strand, 27347327 - 27347176
Alignment:
Q  238 ttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttcccta 336  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  27347327 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttattgagccatactactaggttattgggcttaattcataagctactctatttcccta 27347228  T
Q  337 taaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  27347227 taaatagagctcatttgtaacattgagatacacacatcagtgaataagaata 27347176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 236 - 390
Target Start/End: Original strand, 7876088 - 7876243
Alignment:
Q  236 atttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccc 334  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||||| ||||||||||||||| || |||||||||| | ||||||| ||||||||    
T  7876088 atttgttataaatattaatagtgaatgtccaaataacaaatgtgttagtggaccatactactaggttattaggcttagttcgtaagctactatatttccc 7876187  T
Q  335 tataaatagagctcatttgtaacattgatacacacatcggtgaataagaatatttc 390  Q
    |||||||||||||||||||||||||||| | ||||||  |||||||||||||||||    
T  7876188 tataaatagagctcatttgtaacattgagatacacattagtgaataagaatatttc 7876243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 236 - 386
Target Start/End: Original strand, 11654017 - 11654168
Alignment:
Q  236 atttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccc 334  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||||||  |||||||||| ||| ||||||||| ||||| ||||| ||||||||||    
T  11654017 atttgttataaatattaatagtggatatccaaatagcaaatgtgttagtggatcatactactatgttattgggcttaattcataagctattctatttccc 11654116  T
Q  335 tataaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||| |||||||||||||||||| |||||||  ||||||||||||    
T  11654117 tataaatagagttcatttgtaacattgatatacacatcaatgaataagaata 11654168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 236 - 386
Target Start/End: Complemental strand, 35625414 - 35625261
Alignment:
Q  236 atttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccc 334  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| || ||||||||||||||| ||||||| ||||| |     
T  35625414 atttgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactagattattgggcttagttcataagctactatattttct 35625315  T
Q  335 tataaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||||  |||||||||||   ||||||||||||    
T  35625314 tataaatagagctcatttgtaacattgagatacacacattattgaataagaata 35625261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 37356892 - 37356742
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||| | |||    
T  37356892 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactatattttcttat 37356793  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    ||||||||||||||| |||||||  |||||||||||   ||||||||||||    
T  37356792 aaatagagctcatttataacattgagatacacacattattgaataagaata 37356742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 37365310 - 37365160
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||| ||||| | |||    
T  37365310 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactatattttcttat 37365211  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||  |||||||||||   ||||||||||||    
T  37365210 aaatagagctcatttgtaacattgagatacacacattattgaataagaata 37365160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 236 - 386
Target Start/End: Original strand, 38736036 - 38736189
Alignment:
Q  236 atttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccc 334  Q
    |||||||||||||||||||| ||| |||| |||||| |||| ||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||| |     
T  38736036 atttgttataaatattaatagtggttgtccaaatagaaaatatgttattgggccatactattaggttattgggcttagttcataagctactctattttct 38736135  T
Q  335 tataaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    ||||||||||| ||||||||||||||  |||||| ||||| |||||||| ||||    
T  38736136 tataaatagagttcatttgtaacattcagatacatacatcagtgaataataata 38736189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 386
Target Start/End: Original strand, 39492738 - 39492888
Alignment:
Q  237 tttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccct 335  Q
    ||||||||||||||||||| |||||||| |||||||||||  |||  || ||||||||| ||| || |||||||||||  || | |||||||||||| ||    
T  39492738 tttgttataaatattaatagtggatgtccaaatagcaaataggtttatgagccatactaatagattattgggcttagtctataaactactctatttctct 39492837  T
Q  336 ataaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||| |  |||||||||| | ||| | | | ||| |||||||||||||    
T  39492838 ataaataaaattcatttgtaagagtgagatatatatcagtgaataagaata 39492888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 239 - 404
Target Start/End: Original strand, 23427482 - 23427645
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23427482 tgttataaatattaatatttgatgtccaaatagcaaatgtgttagtggaccatactactaggttttgggcttagttcataagctactctatttccctata 23427581  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctcct 404  Q
    |||||||||||||||||||||||||||||||    || ||||||||||||||||||| ||||||||    
T  23427582 aatagagctcatttgtaacattgatacacacta--gttaataagaatatttctctcttcttctcct 23427645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 235 - 404
Target Start/End: Original strand, 23421632 - 23421799
Alignment:
Q  235 tatttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccc 334  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| || |||||||||||||    
T  23421632 tatttgttataaatattaatatttgatgtccaaatagcaaatgtgttagtggactatactactaggttttgggcttagttcataagttactctatttccc 23421731  T
Q  335 tataaatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctctgcttctcct 404  Q
    |||||||||||||||||||||||||||||||||||    || ||||||||||||||||||| ||||||||    
T  23421732 tataaatagagctcatttgtaacattgatacacacta--gttaataagaatatttctctcttcttctcct 23421799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 238 - 386
Target Start/End: Original strand, 18738572 - 18738721
Alignment:
Q  238 ttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttcccta 336  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  18738572 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctatttaccta 18738671  T
Q  337 taaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||||| | |||| || || ||||||||||    
T  18738672 taaatagagctcatttgtaacattgagagacacgtcagtaaataagaata 18738721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 238 - 392
Target Start/End: Complemental strand, 33661053 - 33660896
Alignment:
Q  238 ttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttcccta 336  Q
    |||||||||||||||||| |||||||| |||||||||||  |||  ||||||||| ||||||||| ||||||||||||||| ||||||||||||| | ||    
T  33661053 ttgttataaatattaatagtggatgtccaaatagcaaataggtttatgggccatattactaggttattgggcttagttcataagctactctattttctta 33660954  T
Q  337 taaatagagctcatttgtaacatt--gatacacacatcggtgaataagaatatttctc 392  Q
    ||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||    
T  33660953 taaatagagttcatttgtaacattgagatacacacatcggtgaataagaatatttctc 33660896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 2978394 - 2978240
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||    
T  2978394 tgttataaatattaatagtggatgtccaaataacaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctattttcctat 2978295  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctc 392  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  2978294 aaatagagctcatttgtaacattgatatacacatcagtgaataagaatatttctc 2978240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 2982338 - 2982184
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  2982338 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggctatactactaggttattgggcttagttcataagctactctatttccctat 2982239  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctc 392  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||||||||||||    
T  2982238 aaatagagctcatttgtaacattgatatacacataagtgaataagaatatttctc 2982184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 239 - 386
Target Start/End: Original strand, 21453160 - 21453310
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||    
T  21453160 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 21453259  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  21453260 aaatagagctcatttgtaacattgggatacacacatcagtgaataagaata 21453310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 239 - 386
Target Start/End: Original strand, 21458334 - 21458484
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||    
T  21458334 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 21458433  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  21458434 aaatagagctcatttgtaacattgggatacacacatcagtgaataagaata 21458484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 237 - 392
Target Start/End: Original strand, 21877162 - 21877320
Alignment:
Q  237 tttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccct 335  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| | |    
T  21877162 tttgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttctt 21877261  T
Q  336 ataaatagagctcatttgtaacatt--gatacacacatcggtgaataagaatatttctc 392  Q
    |||||| ||||||||||||||||||  |||||||||||| ||||||| |||||||||||    
T  21877262 ataaatggagctcatttgtaacattgggatacacacatcagtgaataggaatatttctc 21877320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 15752658 - 15752508
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||    
T  15752658 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 15752559  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||  |||||||||||  |||||||||||||    
T  15752558 aaatagagctcatttgtaacattgagatacacacattagtgaataagaata 15752508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 15758451 - 15758301
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||    
T  15758451 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 15758352  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||  |||||||||||  |||||||||||||    
T  15758351 aaatagagctcatttgtaacattgagatacacacattagtgaataagaata 15758301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 239 - 392
Target Start/End: Original strand, 21883424 - 21883580
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    |||||||||||||||||  ||||||| ||||||||||||||||| || |||||||||||||||| ||||||||||||||| ||||||||||||| | |||    
T  21883424 tgttataaatattaatagcggatgtccaaatagcaaatgtgttattgagccatactactaggttattgggcttagttcataagctactctattttcttat 21883523  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaatatttctc 392  Q
    |||||||||||||||||||||||  |||||||||||| ||||||| |||||||||||    
T  21883524 aaatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttctc 21883580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 238 - 386
Target Start/End: Complemental strand, 49491381 - 49491230
Alignment:
Q  238 ttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttcccta 336  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||| ||||| |||||  ||||||||||||| |||    
T  49491381 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgagcttaattcataggctactctatttctcta 49491282  T
Q  337 taaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  49491281 taaatagagctcatttgtaacattgagatacacacatcagtgaataagaata 49491230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 49486883 - 49486733
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||| ||||| |||||  ||||||||||||| ||||    
T  49486883 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgagcttaattcataggctactctatttctctat 49486784  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  49486783 aaatagagctcatttgtaacattgagatacacacatcagtgaataagaata 49486733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 238 - 386
Target Start/End: Original strand, 21473103 - 21473254
Alignment:
Q  238 ttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttcccta 336  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||| || |||| |||||||||| ||||||||||||| | ||    
T  21473103 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactattagcttattggacttagttcataagctactctattttctta 21473202  T
Q  337 taaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  21473203 taaatagagctcatttgtaacattgagatacacacatcagtgaataagaata 21473254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 239 - 386
Target Start/End: Original strand, 21477492 - 21477641
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |||||   |||    
T  21477492 tgttataaatattaatagtggatgtccaaatagcaa-tgtgttattgggccatactactaggttattgggcttagttcataagctactttatttttttat 21477590  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    |||||| ||||||||||||||||  ||||||||||||||| ||||||||||    
T  21477591 aaatagggctcatttgtaacattgagatacacacatcggtaaataagaata 21477641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 25445218 - 25445070
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  25445218 tgttataaatattaatagtggatgtccaaatagcaaatgtgttaatgggccatactactaggttattgggcttaattcataagctactctatttccctat 25445119  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25445118 aaatagagctcatttgtaacattgatacacacatcagtgaataagaata 25445070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 19437696 - 19437548
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  19437696 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 19437597  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||    
T  19437596 aaatagagctcatttgtaacattgagacacacattagtgaataagaata 19437548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 238 - 386
Target Start/End: Complemental strand, 25454877 - 25454728
Alignment:
Q  238 ttgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttcccta 336  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||    
T  25454877 ttgttataaatattaatagtgaatgtccaaatagcaaatgtgttagtgggccatactactaggttattgagcttaattcataagctactctatttcccta 25454778  T
Q  337 taaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  25454777 taaatagagctcatttgtaacattgatacacacatcattgaataagaata 25454728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 19443271 - 19443123
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||    
T  19443271 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctattttcctat 19443172  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||    
T  19443171 aaatagagctcatttgtaacattgagacacacattagtgaataagaata 19443123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 43293297 - 43293147
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||    
T  43293297 tgttataaacattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 43293198  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  43293197 aaatagagctcatttgtaacattgggatacacacatcagtgaataagaata 43293147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 239 - 387
Target Start/End: Complemental strand, 24053447 - 24053296
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||    
T  24053447 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 24053348  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaatat 387  Q
    ||||||||||||||||||| |||  |||||| ||||  ||||||||||||||    
T  24053347 aaatagagctcatttgtaatattgagatacatacattagtgaataagaatat 24053296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 43287552 - 43287402
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||| ||||||| | |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||    
T  43287552 tgttataaacattaatagtagatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 43287453  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||  |||||||||||  |||||||||||||    
T  43287452 aaatagagctcatttgtaacattgagatacacacattagtgaataagaata 43287402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 24056782 - 24056633
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| | ||||||||||||||| ||| ||||||||||||||| |||| |||||||||| ||||||||||||| | |||    
T  24056782 tgttataaatattaatagtggatgtccagatagcaaatgtgttattgg-ccatactactaggttattggacttagttcataagctactctattttcttat 24056684  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||  |||||||||||  |||||||||||||    
T  24056683 aaatagagctcatttgtaacattgagatacacacattagtgaataagaata 24056633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 239 - 360
Target Start/End: Original strand, 31437151 - 31437273
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||| | |||||| |||| ||| ||||| ||||  ||| ||||||||||||||| ||||||||||||| |||||    
T  31437151 tgttataaatattaatagtggatgtccaaacaacaaatgagttaatggaccataatactgtgttattgggcttagttcataagctactctattttcctat 31437250  T
Q  338 aaatagagctcatttgtaacatt 360  Q
    ||||| || ||||||||||||||    
T  31437251 aaataaagttcatttgtaacatt 31437273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 360
Target Start/End: Original strand, 31433045 - 31433167
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| |||||||||||  |||| |||  ||| | ||||| || ||| ||||||||||| || || |||||||||||||    
T  31433045 tgttataaatattaatagtggatgtccaaatagcaaattagttaatggagcatgcaactagtttattgagcttagttcataagatattctatttccctat 31433144  T
Q  338 aaatagagctcatttgtaacatt 360  Q
    |||||  | ||||||||||||||    
T  31433145 aaataatgttcatttgtaacatt 31433167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 360
Target Start/End: Original strand, 8872305 - 8872362
Alignment:
Q  303 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt 360  Q
    |||||||||||  ||  |||||| ||||||||||||||||||| ||||||||||||||    
T  8872305 ttgggcttagtctataggctactatatttccctataaatagagttcatttgtaacatt 8872362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 23059113 - 23058965
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  23059113 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 23059014  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||    
T  23059013 aaatagagctcatttgtaacattgagacacacattagtgaataagaata 23058965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 23053538 - 23053390
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||||||    
T  23053538 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgagcttaattcataagctactctatttccctat 23053439  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||    
T  23053438 aaatagagctcatttgtaacattgagacacacattagtgaataagaata 23053390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 239 - 395
Target Start/End: Complemental strand, 21171346 - 21171189
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  21171346 tgttataaatattaatagtggatgtccaaatggcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 21171247  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctct 395  Q
    ||||||||||||||||||||||||| | ||||||  ||||||||||||| || |||||    
T  21171246 aaatagagctcatttgtaacattgagatacacataagtgaataagaatacttttctct 21171189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 35264699 - 35264551
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||  ||||||||||||||||||    
T  35264699 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataggctactctatttccctat 35264600  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  35264599 aaatagagctcatttgtaacattgagatacacatcagtgaataagaata 35264551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 35270440 - 35270292
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||  ||||||||||||||||||    
T  35270440 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataggctactctatttccctat 35270341  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  35270340 aaatagagctcatttgtaacattgagatacacatcagtgaataagaata 35270292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 25365553 - 25365397
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||    
T  25365553 tgttataaatattaatagtggatgttcaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcctat 25365454  T
Q  338 aaatagagctcatttgtaacattg--atacacacatcggtgaataagaatatttctc 392  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||||||||    
T  25365453 aaatagagctcatttgtaacattgtaaaacacacattagtgaataagaatatttctc 25365397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 239 - 386
Target Start/End: Original strand, 16675564 - 16675709
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggttttgggcttagttcattagctactctatttccctata 338  Q
    ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||  ||||||| ||||| ||||||| ||||||||||||    
T  16675564 tgttataaatattaatagtgaatgtccaaatagcaaatgtgttagtgggccatactactaggtt--gggcttaattcataagctactatatttccctata 16675661  T
Q  339 aatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    |||||||||||||||||||||||| | ||||||  |||||||||||||    
T  16675662 aatagagctcatttgtaacattgagatacacataagtgaataagaata 16675709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 39654086 - 39653938
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||||||| ||||||||| ||||| ||||||| ||||||| |||    
T  39654086 tgttataaatattaatagtggatgtccaaataacaaatgtgttagtggaccatactactaggttattgggcttaattcataagctactatatttccttat 39653987  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  39653986 aaatagagctcatttataacattgatatacacatcagtgaataagaata 39653938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 239 - 395
Target Start/End: Complemental strand, 21178209 - 21178050
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactc--tatttccct 335  Q
    ||||||||||||||||| |||||||  |||| |||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||  ||||| |||    
T  21178209 tgttataaatattaatagtggatgttcaaatggcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatattttcct 21178110  T
Q  336 ataaatagagctcatttgtaacattgatacacacatcggtgaataagaatatttctctct 395  Q
    ||||||||||||||||||||||||||| | ||||||  ||||||||||||| || |||||    
T  21178109 ataaatagagctcatttgtaacattgagatacacataagtgaataagaatacttttctct 21178050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 2135882 - 2135850
Alignment:
Q  325 tctatttccctataaatagagctcatttgtaac 357  Q
    ||||||||| |||||||||||||||||||||||    
T  2135882 tctatttccatataaatagagctcatttgtaac 2135850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 239 - 386
Target Start/End: Original strand, 14025 - 14173
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  14025 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgagccatactactaggttattgagcttagttcataagctactctatttccctat 14124  T
Q  338 aaatagagctcatttgtaacattgatacacacatcggtgaataagaata 386  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  14125 aaatagagctcatttgtaacattgagagacacatcagtgaataagaata 14173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 239 - 386
Target Start/End: Original strand, 111875 - 112025
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||  ||||||||||||||||||    
T  111875 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataggctactctatttccctat 111974  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaata 386  Q
    |||||||| ||||||||||||||  |||||||||||| |||||||||||||    
T  111975 aaatagagttcatttgtaacattgagatacacacatcagtgaataagaata 112025  T

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Target: scaffold0014; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 106062 - 106118
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatacta 295  Q
    ||||||||||||||| |  ||||||| ||||||||||||||||||||||| ||||||    
T  106062 tgttataaatattaacagcggatgtccaaatagcaaatgtgttagtgggctatacta 106118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 239 - 392
Target Start/End: Original strand, 9323 - 9478
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||    
T  9323 tgttataaatattaatagtggatgtccaaatagcaaatgtattattgggccatactactaggttattgggcttagttcataagctactctattttcttat 9422  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaatatttctc 392  Q
    |||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||    
T  9423 aaatagagctcatttgtaacattgggatacacacatc-atgaataagaatatttctc 9478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 239 - 388
Target Start/End: Original strand, 57939 - 58091
Alignment:
Q  239 tgttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 337  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||| | |||    
T  57939 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactatattttcttat 58038  T
Q  338 aaatagagctcatttgtaacatt--gatacacacatcggtgaataagaatatt 388  Q
    |||||||||||||||||||||||  |||||||||||   ||||||||||||||    
T  58039 aaatagagctcatttgtaacattgagatacacacattattgaataagaatatt 58091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 388
Target Start/End: Complemental strand, 6435 - 6287
Alignment:
Q  241 ttataaatattaatattggatgtctaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctataa 339  Q
    ||||||||||||| | |||||||| |||||||||||   ||  ||||| |||| | |||||| ||||||||||||||| ||||||||||||||||| |||    
T  6435 ttataaatattaacagtggatgtccaaatagcaaataaatttatgggctatacgaataggttattgggcttagttcataagctactctatttccctgtaa 6336  T
Q  340 atagagctcatttgtaacattgatacacacatcggtgaataagaatatt 388  Q
    ||||| |||| |||||||| |||   |  |||| |||||||||||||||    
T  6335 atagaactcaattgtaacagtgagtgatgcatcagtgaataagaatatt 6287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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