View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11943_low_12 (Length: 275)
Name: NF11943_low_12
Description: NF11943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11943_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 48989048 - 48988801
Alignment:
| Q |
15 |
cacacaagagggttaagtcaccatgtatggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtctgaaa |
114 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| |
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| T |
48989048 |
cacaaaagagggttaagtcaccatgtatggtaatgaaaagcaaaattaggatgattggccttcaaccaccagaatgattgttttttaatt--gtctaaaa |
48988951 |
T |
|
| Q |
115 |
gttaactaatagtattccacttttgttggaagactctagagttcctgtcacgctagataatccaaatacaagagagccaaatcaagtagaaggaagatga |
214 |
Q |
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|
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
48988950 |
gttaactaatagtatttcccttttgttggaagactctagagttcctgtcacgctagataatctaaatacaagagagccaaatcaagtagaaggaagagga |
48988851 |
T |
|
| Q |
215 |
aaagatatttgagaagccgcccaacaatcgaaattgaataatgtgttcat |
264 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48988850 |
aaagatatttgagaagccgcccaacaatcgaaattgaataatgtgttcat |
48988801 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 55417008 - 55416795
Alignment:
| Q |
18 |
acaagagggttaagtcaccatgtatggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtctgaaagtt |
117 |
Q |
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||||||| ||||| |||||||| ||||||| ||||| ||||||||||||||| | ||||||||||||||| ||||| |||||||| ||| ||| | |
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| T |
55417008 |
acaagagaattaagccaccatgtgtggtaattaaaagcaaaattaggatgatttgccttcaaccaccagaagaattgtagcttaattttatctataagct |
55416909 |
T |
|
| Q |
118 |
aactaatagtattccacttttgttggaagactctagagttcctgtcacgctagataatccaaatacaagagagccaaatcaagtagaaggaagatgaaaa |
217 |
Q |
| |
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| |||| ||| ||||||||||||||| |||| ||| ||||| || | | ||||||| |||||| |||||||||||||||||| | ||| |||| |
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| T |
55416908 |
gatgaataaaattttctttttgttggaagactatagaattcatgtcatgccaaacaatccaagtacaagtgagccaaatcaagtagaaagtagaagaaat |
55416809 |
T |
|
| Q |
218 |
gatatttgagaagc |
231 |
Q |
| |
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||| ||| |||||| |
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| T |
55416808 |
gatttttcagaagc |
55416795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 26698188 - 26698114
Alignment:
| Q |
20 |
aagagggttaagtcaccatgtatggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattg |
94 |
Q |
| |
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|||||| ||||| ||||| | || |||| ||||| ||||||||||||||| | ||||||||||||||| ||||| |
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| T |
26698188 |
aagaggattaagccaccacatgtgataattaaaagcaaaattaggatgatttggcttcaaccaccagaaggattg |
26698114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 48825370 - 48825438
Alignment:
| Q |
42 |
tggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtct |
110 |
Q |
| |
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||||||| |||| ||||||||||||||| | |||||||||||| || |||||| |||||||||||| |
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|
| T |
48825370 |
tggtaattaaaaacaaaattaggatgatttgccttcaaccaccaaaaagattgtaccttaattttgtct |
48825438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 41 - 263
Target Start/End: Complemental strand, 9493807 - 9493586
Alignment:
| Q |
41 |
atggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtctgaaagttaactaatagtattccacttttgt |
140 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| || |||||||| ||||| |||||| || ||||||| | |||||| | |||||||||| | ||||||| |
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| T |
9493807 |
atggtaatgaaaagcaaaattaggataatttgttttcaaccatcagaaggattgtagctttattttgtttaaaagttcattaatagtatttcccttttgt |
9493708 |
T |
|
| Q |
141 |
tggaagactctagagttcctgtcacgctagataatccaaatacaagagagccaaatcaagtagaaggaagatgaaaagatatttgagaagccgcccaaca |
240 |
Q |
| |
|
||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||||||||||||||||| |||||| | || |||||||| ||||| |
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|
| T |
9493707 |
tggaagactctagagttcccgtcacgccaaataatccaaatacaagatagccaaatcaagtagaaggaagcggaaaaggttttcgagaagcc-accaacg |
9493609 |
T |
|
| Q |
241 |
atcgaaattgaataatgtgttca |
263 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
9493608 |
atcgaaattgaataatgtgttca |
9493586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 9145715 - 9145531
Alignment:
| Q |
20 |
aagagggttaagtcaccatgtatggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtctgaaagttaa |
119 |
Q |
| |
|
|||||| ||||| |||||| | || |||| ||||| ||||||||| ||||| | |||||||||||| || ||||| |||||||| ||| ||| | | |
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|
| T |
9145715 |
aagaggattaagccaccatttgtgctaattaaaagcaaaattagggtgatttgccttcaaccaccaaaaagattggagcttaattttatctagaagctga |
9145616 |
T |
|
| Q |
120 |
ctaatagtattccacttttgttggaagactctagagttcctgtcacgctagataatccaaatacaagagagccaaatcaagtaga |
204 |
Q |
| |
|
|||||| ||||| | |||||||||||||||| || ||| |||||||| | | ||| |||| |||||||||||| |||||||||| |
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| T |
9145615 |
ttaatagaattccccgtttgttggaagactctggaattcttgtcacgccaaacaattcaaacacaagagagccatatcaagtaga |
9145531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 26159687 - 26159832
Alignment:
| Q |
50 |
aaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtctgaaagttaactaatagtattccacttttgttggaagact |
149 |
Q |
| |
|
||||| ||||||||||||||| ||||||| |||| |||| ||||| |||||||| ||| ||||| | | || | ||| ||||||||| || ||| |
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| T |
26159687 |
aaaagcaaaattaggatgatttgtcttcagccactagaaggattgaagcttaattttatctataagttgaattattgaattgaccttttgttgaaa-act |
26159785 |
T |
|
| Q |
150 |
ctagagttcctgtcacgctagataatccaaatacaagagagccaaat |
196 |
Q |
| |
|
|||| |||||||||||| |||||||||||| |||||| |||||||| |
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|
| T |
26159786 |
ctagcattcctgtcacgccagataatccaaacacaagaaagccaaat |
26159832 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 99 - 264
Target Start/End: Original strand, 19120364 - 19120534
Alignment:
| Q |
99 |
ttaattttgtctgaaagttaactaatagtattccacttttgttggaagactctagagttcctgtcacgctagataatccaaatacaagagagccaaatca |
198 |
Q |
| |
|
|||||||||||| || || | ||||||||||| ||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||||||| |
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|
| T |
19120364 |
ttaattttgtctagaatttgattaatagtattctccttttgttgcaagactctagagttcctatcacgtaaaataatccaaatacaagagagccaaatca |
19120463 |
T |
|
| Q |
199 |
agtagaaggaagatgaaaag-----atatttgagaagccgcccaacaatcgaaattgaataatgtgttcat |
264 |
Q |
| |
|
||||||||||||| |||| | | ||||||||||| ||||| |||| ||||||| ||||||||||| |
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|
| T |
19120464 |
agtagaaggaagaggaaatggttttaattttgagaagccacccaatgatcggaattgaagaatgtgttcat |
19120534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 13318037 - 13318224
Alignment:
| Q |
15 |
cacacaagagggttaagtcaccatgtatggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtctgaaa |
114 |
Q |
| |
|
|||| |||||| ||||| |||||||| ||||||| ||||| ||||||||||||||| | | || ||||||||||||||||| |||||||||||| || |
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|
| T |
13318037 |
cacagaagaggattaagccaccatgtgtggtaattaaaagcaaaattaggatgatttgccaccagccaccagaatgattgttgcttaattttgtctttaa |
13318136 |
T |
|
| Q |
115 |
gttaactaatagtattccacttttgttggaagactctagagttcctgtcacgctagataatccaaatacaagagagccaaatcaagta |
202 |
Q |
| |
|
| | | ||||| ||| | ||||||||||||||||||| |||| |||||| ||| | | || |||||||||||| |||||||||||| |
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|
| T |
13318137 |
gctgatgaatagaatttccattttgttggaagactctagtgttcttgtcacactaaacagtcaaaatacaagagatccaaatcaagta |
13318224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 52243516 - 52243344
Alignment:
| Q |
27 |
ttaagtcaccatgtatggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtctgaaagttaactaatag |
126 |
Q |
| |
|
|||||| ||||||| ||||||| ||| ||||||||||||||||| | ||||| ||||||||| ||||| ||||||||||| ||| | | |||||| |
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|
| T |
52243516 |
ttaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccaccagaaggattggagcttaattttgtccacaagctgattaatag |
52243417 |
T |
|
| Q |
127 |
tattccacttttgttggaagactctagagttcctgtcacgctagataatccaaatacaagagagccaaatcaa |
199 |
Q |
| |
|
| || |||||||||||| ||||||| ||| |||| ||| | ||| | |||| |||||| ||| ||||||| |
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|
| T |
52243416 |
aaagccccttttgttggaaaactctagcattcatgtcgcgccaaatagttcaaacacaagaaagctaaatcaa |
52243344 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 513518 - 513550
Alignment:
| Q |
135 |
ttttgttggaagactctagagttcctgtcacgc |
167 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
513518 |
ttttgttggaagactctagagttccggtcacgc |
513550 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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