View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11943_low_15 (Length: 260)
Name: NF11943_low_15
Description: NF11943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11943_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 30048681 - 30048920
Alignment:
| Q |
5 |
ttgggaatggaattgcatcagcttgatgatggaacatttctttcgcaaaagaaatatgctaatgatgtgctgaaaaaattcaaattggagagttgtaaat |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30048681 |
ttgggaatggaattgcatcagcttgatgatggaatatttctttcacaaaagaaatatgctaatgatgtgctgaaaaaattcaaattggagagttgtaaat |
30048780 |
T |
|
| Q |
105 |
ctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatattactcaatataggagtttgattggttgtcttct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30048781 |
ctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgttactcaatataggagtttgattggttgtcttct |
30048880 |
T |
|
| Q |
205 |
ttacttgactgcaactagaccagatttggtgttctctgct |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
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| T |
30048881 |
ttacttgactgcaactagaccagatttgatgttctctgct |
30048920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 7161038 - 7161274
Alignment:
| Q |
5 |
ttgggaatggaattgcatcagcttgatgatggaacatttctttcgcaaaagaaatatgctaatgatgtgctgaaaaaattcaaattggagagttgtaaat |
104 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
7161038 |
ttgggaatggaattgcatcaacttgatgatggaatatttctttcacaaaagaaatatgctaatgatgttctgaaaaaattcaaattggagagttgtaagt |
7161137 |
T |
|
| Q |
105 |
ctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatattactcaatataggagtttgattggttgtcttct |
204 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7161138 |
ctgtttcaacacctcttgctgtaaatgaaaaactctcgaaatctgatggagatgctaaggcagatgttactcaatataggagtttgattggttgtcttct |
7161237 |
T |
|
| Q |
205 |
ttacttgactgcaactagaccagatttggtgttctct |
241 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| |
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|
| T |
7161238 |
ttacttgactgcaactagactagatttgatgttctct |
7161274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 197334 - 197095
Alignment:
| Q |
5 |
ttgggaatggaattgcatcagcttgatgatggaacatttctttcgcaaaagaaatatgctaatgatgtgctgaaaaaattcaaattggagagttgtaaat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
197334 |
ttgggaatggaattgcatcagcttgatgatggaatatttctttcacaaaagaaatatgctaatgatgtgctgaaaaaattcaaattggagagttgtaaat |
197235 |
T |
|
| Q |
105 |
ctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatattactcaatataggagtttgattggttgtcttct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
197234 |
ctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgttactcaatataggagtttgattggttgtcttct |
197135 |
T |
|
| Q |
205 |
ttacttgactgcaactagaccagatttggtgttctctgct |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
197134 |
ttacttgactgcaactagaccagatttgatgttctctgct |
197095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 3944935 - 3945174
Alignment:
| Q |
5 |
ttgggaatggaattgcatcagcttgatgatggaacatttctttcgcaaaagaaatatgctaatgatgtgctgaaaaaattcaaattggagagttgtaaat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3944935 |
ttgggaatggaattgcatcagcttgatgatggaatatttctttcacaaaagaaatatgctaatgatgtgctgaaaaaattcaaattggagagttgtaaat |
3945034 |
T |
|
| Q |
105 |
ctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatattactcaatataggagtttgattggttgtcttct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3945035 |
ctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgttactcaatataggagtttgattggttgtcttct |
3945134 |
T |
|
| Q |
205 |
ttacttgactgcaactagaccagatttggtgttctctgct |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
3945135 |
ttacttgactgcaactagaccagatttgatgttctctgct |
3945174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 22364563 - 22364802
Alignment:
| Q |
5 |
ttgggaatggaattgcatcagcttgatgatggaacatttctttcgcaaaagaaatatgctaatgatgtgctgaaaaaattcaaattggagagttgtaaat |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22364563 |
ttgggaatggaattgcatcaacttgatgatggaatatttctttcacaaaagaaatatgctaatgatgtgctgaaaaaattcaaattggagagttgtaaat |
22364662 |
T |
|
| Q |
105 |
ctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatattactcaatataggagtttgattggttgtcttct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
22364663 |
ctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgttactcaatataggagtttgattggttgtcttct |
22364762 |
T |
|
| Q |
205 |
ttacttgactgcaactagaccagatttggtgttctctgct |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
22364763 |
ttacttgactgcaactagaccagatttgatgttctctgct |
22364802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 39950495 - 39950256
Alignment:
| Q |
5 |
ttgggaatggaattgcatcagcttgatgatggaacatttctttcgcaaaagaaatatgctaatgatgtgctgaaaaaattcaaattggagagttgtaaat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
39950495 |
ttgggaatggaattgcatcagcttgatgatggaatatttctttcacaaaagaaatatgctaatgatgtgcttaaaaaattcaaattggagagttgtaaat |
39950396 |
T |
|
| Q |
105 |
ctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatattactcaatataggagtttgattggttgtcttct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
39950395 |
ctgtttcaacacctcttgctgtaaatgaaaaactctcaaaatctgatggagatgctaaggcagatgttactcaatataggagtttgataggttgtcttct |
39950296 |
T |
|
| Q |
205 |
ttacttgactgcaactagaccagatttggtgttctctgct |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39950295 |
ttacttgactgcaactagaccagatttgatgttctctgct |
39950256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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