View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11943_low_2 (Length: 742)

Name: NF11943_low_2
Description: NF11943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11943_low_2
NF11943_low_2
[»] chr4 (2 HSPs)
chr4 (6-731)||(48988080-48988827)
chr4 (14-191)||(55416604-55416780)
[»] chr2 (4 HSPs)
chr2 (9-170)||(9493448-9493608)
chr2 (236-313)||(9493326-9493404)
chr2 (65-105)||(1680404-1680444)
chr2 (41-202)||(10725002-10725164)
[»] chr8 (2 HSPs)
chr8 (9-313)||(20138053-20138362)
chr8 (54-159)||(13318274-13318378)
[»] chr7 (2 HSPs)
chr7 (9-313)||(44353709-44354018)
chr7 (64-141)||(19120555-19120632)
[»] chr3 (1 HSPs)
chr3 (14-150)||(3452459-3452595)


Alignment Details
Target: chr4 (Bit Score: 623; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 6 - 731
Target Start/End: Complemental strand, 48988827 - 48988080
Alignment:
Q  6 acaatcgcaattgaataatgtgttcatgaacggtcgctggcttgactgaagccaatatgagccaagtataaatagcataccaaatttgaccataaaaatc 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48988827 acaatcgaaattgaataatgtgttcatgaacggtcgctggcttgactgaagccaatatgagccaagtataaatagcataccaaatttgaccataaaaatc 48988728  T
Q  106 gtcatgcaaaaagagatgatcaatattctcttccaacttacaaccgcctaaacatagagatgtgtccggttgaagaatccttctccgattaagttgtcgc 205  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48988727 gtcatgcaaaaagagatgatcaatattctcttccaacctacaaccgcctaaacatagagatgtgtccggttgaagaatccttctccgattaagttgtcgc 48988628  T
Q  206 aagttg--agttggttgcacaataggcgtagggcaaaaatgttgattttcagagaacttccttgtaccaaatagttgaaaaaagaacattgttgaatgtt 303  Q
    ||||||  |||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48988627 aagttggaagttggttacacaataggcgtaaggcaaaaatgttgactttcagagaacttccttgtaccaaatagttgaaaaaagaacattgttgaatgtt 48988528  T
Q  304 tgatcccttgtttgatagaatgtgaagtgtgattgcaaagaacaatagtcaatagttcaggaggcagcaagaggagaattccttagatgcaattttaaga 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48988527 tgatcccttgtttgatagaatgtgaagtgtgattgcaaagaacaatagtcaatagttcaggaggcagcaagaggagaattccttagatgcaattttaaga 48988428  T
Q  404 atgacaccatggattttaccagatcttc--------------------aaaatttatctatgacaagtaatagatcaatctccgacctataatttttaaa 483  Q
    ||||| ||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48988427 atgacgccatggattttaccagatcttcaaaaaagcatactagacttcaaaatttatctatgacaagtaatagatcaatctccgacctataatttttaaa 48988328  T
Q  484 ataacacatgcttagactttacaaagcatgtccggactgatttccacctctaacaatattgaagttataaattcttttattttgtccctttctttgttca 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48988327 ataacacatgcttagactttacaaagcatgtccggactgatttccacctctaacaatattgaagttataaattcttttattttgtccctttctttgttca 48988228  T
Q  584 gtgattgtaaaagcataacaatatacaagcttcagcttttcacaaaattgtacccaattttggcattgtaaataaatataatgacatttctacattttta 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48988227 gtgattgtaaaagcataacaatatacaagcttcagcttttcacaaaattgtacccaattttggcattgtaaataaatataatgacatttctacattttta 48988128  T
Q  684 tgtgactcaannnnnnnaacaaaaggatattatgatcatgatgtccat 731  Q
    ||||||||||       |||||||||||||||||||||||| ||||||    
T  48988127 tgtgactcaatttttttaacaaaaggatattatgatcatgacgtccat 48988080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 55416780 - 55416604
Alignment:
Q  14 aattgaataatgtgttcatgaacggtcgctggcttgactgaagccaatatgagccaagtataaatagcataccaaatttgaccataaaaatcgtcatgca 113  Q
    ||||||| ||| |||||||||||||| |||||| |||||||| |||||   ||||||||||||||| | ||||||||||| | | |||||||   |||||    
T  55416780 aattgaagaatatgttcatgaacggtagctggcctgactgaacccaatcctagccaagtataaatatcgtaccaaatttgtctaaaaaaatcacaatgca 55416681  T
Q  114 aaaagagatgatcaatattctcttccaacttacaaccgcctaaacatagagatgtgtccggttgaagaatccttctcc 191  Q
    | || || ||||||||||||||||| |||| |||||||||| |||| |||||||| | |||||| |||| ||||||||    
T  55416680 agaaaaggtgatcaatattctcttcaaactcacaaccgcctgaacaaagagatgtattcggttggagaa-ccttctcc 55416604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 3e-50; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 9493608 - 9493448
Alignment:
Q  9 atcgcaattgaataatgtgttcatgaacggtcgctggcttgactgaagccaatatgagccaagtataaatagcataccaaatttgaccataaaaatcgtc 108  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||       
T  9493608 atcgaaattgaataatgtgttcacgaacagtcgctggcttgactgaagccaatatgagccaaa-ataaatagcataccaaatttgaccataataatcaca 9493510  T
Q  109 atgcaaaaagagatgatcaatattctcttccaacttacaaccgcctaaacatagagatgtgt 170  Q
    ||||||||||||||||||||||||||||||||||  | | |||||| |||||||||||||||    
T  9493509 atgcaaaaagagatgatcaatattctcttccaacccatagccgcctgaacatagagatgtgt 9493448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 236 - 313
Target Start/End: Complemental strand, 9493404 - 9493326
Alignment:
Q  236 gcaaaaatgttgattttcaga-gaacttccttgtaccaaatagttgaaaaaagaacattgttgaatgtttgatcccttg 313  Q
    ||||||||||||||||| ||| |||||| ||||| |||||| |||||||||||   ||||||||| |||||||||||||    
T  9493404 gcaaaaatgttgatttttagatgaactttcttgtgccaaatggttgaaaaaaggttattgttgaaagtttgatcccttg 9493326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 1680444 - 1680404
Alignment:
Q  65 agccaagtataaatagcataccaaatttgaccataaaaatc 105  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  1680444 agccaagtataaattgcataccaaatttgaccaaaaaaatc 1680404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 10725002 - 10725164
Alignment:
Q  41 gctggcttgactgaagccaatatgagccaagtataaatagcataccaaatttgaccataaaaatcgtcatgcaaaaagagatgatcaatattctcttcca 140  Q
    |||||||||| |||||| |||   | ||||| ||||||| | ||||||||||| ||| ||||| |   |||||| || |  ||||||||||||||||| |    
T  10725002 gctggcttgattgaagcgaatcataaccaagaataaatatcgtaccaaatttgtccaaaaaaaccacaatgcaagaaaatgtgatcaatattctcttcaa 10725101  T
Q  141 acttacaaccgcctaaacatagagatgtgtccggttgaagaatccttc-tccgattaagttgt 202  Q
    ||  |||||| |||||||| |||||| | | |||||| | || ||||| || |||||||||||    
T  10725102 acccacaacctcctaaacaaagagatatattcggttgcaaaacccttcttctgattaagttgt 10725164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 313
Target Start/End: Complemental strand, 20138362 - 20138053
Alignment:
Q  9 atcgcaattgaataatgtgttcatgaacggtcgctggcttgactgaagccaatatgagccaagtataaatagcataccaaatttgaccataaaaa-tcgt 107  Q
    |||| ||||||| ||| |||||||| || || | || ||| | ||||||||   ||||||||||||||||| ||||||||||||||| | ||||| ||      
T  20138362 atcgaaattgaagaatatgttcatggacagtagttgacttaattgaagccagattgagccaagtataaatatcataccaaatttgacgaaaaaaaatcac 20138263  T
Q  108 catgcaaaaagagatgatcaatattctcttccaacttacaaccgcctaaacatagagatgtgtccggttgaagaatccttctcc-gattaagttgtcgca 206  Q
     ||||||||| |||||||||||||| ||||||||| |||||| | || |||| |||||||||| ||| ||||| |||||| |||  ||||||||  | ||    
T  20138262 aatgcaaaaaaagatgatcaatattttcttccaacctacaactgactgaacaaagagatgtgttcggatgaagtatccttttcctaattaagttaccaca 20138163  T
Q  207 agttg--agttggttgcacaataggcgtagggcaaaaatgttgattttcagagaact-tccttgtaccaaatagttgaaaaaagaacattgttgaatgtt 303  Q
    |||||  ||| | || | |||||  |||  | | |||||||||||||| | |||| | ||||||| |||||| |||| ||||||| | |||||| | |||    
T  20138162 agttggaagtcgattacgcaataaacgtcagacgaaaatgttgatttttaaagaaatctccttgttccaaatggttggaaaaagatctttgttggaagtt 20138063  T
Q  304 tgatcccttg 313  Q
    ||||||||||    
T  20138062 tgatcccttg 20138053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 13318274 - 13318378
Alignment:
Q  54 aagccaatatgagccaagtataaatagcataccaaatttgaccataaaaatcgtcatgcaaaaagagatgatcaatattctcttccaacttacaaccgcc 153  Q
    |||||||| | ||||||||||||||| ||| ||||||||||||| |||||||   ||||||||| ||||||||||| |||||||| |||  ||||| |||    
T  13318274 aagccaatcttagccaagtataaataccattccaaatttgacca-aaaaatcacaatgcaaaaacagatgatcaatgttctcttcaaacccacaactgcc 13318372  T
Q  154 taaaca 159  Q
    ||||||    
T  13318373 taaaca 13318378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 313
Target Start/End: Original strand, 44353709 - 44354018
Alignment:
Q  9 atcgcaattgaataatgtgttcatgaacggtcgctggcttgactgaagccaatatgagccaagtataaatagcataccaaatttgaccataaaaa-tcgt 107  Q
    |||| ||||||| ||| |||||||| || || | || ||| | ||||||||   ||||||||||||||||| ||||||||||||||| | ||||| ||      
T  44353709 atcgaaattgaagaatatgttcatggacagtagttgacttaattgaagccagattgagccaagtataaatatcataccaaatttgacgaaaaaaaatcac 44353808  T
Q  108 catgcaaaaagagatgatcaatattctcttccaacttacaaccgcctaaacatagagatgtgtccggttgaagaatccttctcc-gattaagttgtcgca 206  Q
     ||||||||| |||||||||||||| ||||||||| |||||| | || |||| |||||||||| ||| ||||| |||||| |||  ||||||||  | ||    
T  44353809 aatgcaaaaaaagatgatcaatattttcttccaacctacaactgactgaacaaagagatgtgttcggatgaagtatccttttcctaattaagttaccaca 44353908  T
Q  207 agttg--agttggttgcacaataggcgtagggcaaaaatgttgattttcagagaact-tccttgtaccaaatagttgaaaaaagaacattgttgaatgtt 303  Q
    |||||  ||| | || | |||||  |||  | | |||||||||||||| | |||| | ||||||| |||||| |||| ||||||| | |||||| | |||    
T  44353909 agttggaagtcgattacgcaataaacgtcagacgaaaatgttgatttttaaagaaatctccttgttccaaatggttggaaaaagatctttgttggaagtt 44354008  T
Q  304 tgatcccttg 313  Q
    ||||||||||    
T  44354009 tgatcccttg 44354018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 19120555 - 19120632
Alignment:
Q  64 gagccaagtataaatagcataccaaatttgaccataaaaatcgtcatgcaaaaagagatgatcaatattctcttccaa 141  Q
    ||||||| ||||||||||||||||||||| |||| | ||||||  ||||||||| |||||||||||||||||||||||    
T  19120555 gagccaaatataaatagcataccaaatttaaccaaataaatcgcaatgcaaaaaaagatgatcaatattctcttccaa 19120632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 3452459 - 3452595
Alignment:
Q  14 aattgaataatgtgttcatgaacggtcgctggcttgactgaagccaatatgagccaagtataaatagcataccaaatttgaccataaaaatcgtcatgca 113  Q
    ||||||| ||| || |||| ||| || | ||| |||||||||||||||   ||||||||||||||| | ||||||||||| ||||||||||||  |||||    
T  3452459 aattgaagaatatggtcattaacagtagttggtttgactgaagccaatcgtagccaagtataaatatcgtaccaaatttgtccataaaaatcgcaatgca 3452558  T
Q  114 aaaagagatgatcaatattctcttccaacttacaacc 150  Q
    | || |||||||||||||| ||||| |||| ||||||    
T  3452559 agaaaagatgatcaatattatcttcaaactcacaacc 3452595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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