View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11943_low_5 (Length: 497)
Name: NF11943_low_5
Description: NF11943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11943_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 20 - 494
Target Start/End: Original strand, 41704017 - 41704491
Alignment:
| Q |
20 |
atggtaaataggggtgtgtgcagaagaatgcaagtaagccaatgcttcagctgtttgaaaagcaatcttaagccnnnnnnnccagtcaagaaaatttgga |
119 |
Q |
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| T |
41704017 |
atggtaaataggggtgtgtgcagaagaatgcaagtaagccaatgcttcagctgtttgaaaagcaatcttaagcctttttttccagtcaagaaaatttgga |
41704116 |
T |
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| Q |
120 |
tatctaccatgaatatggtcatagagggtcccatttgagatatactcatagatcatcaaaggctgctcagattccacacagcaacctaagagtcttacta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704117 |
tatctaccatgaatatggtcatagagggtcccatttgagatatactcatagatcatcaaaggctgctcagattccacacagcaacctaagagtcttacta |
41704216 |
T |
|
| Q |
220 |
ggttcttgtgattaacttgagaaagtattgaaacctcattaagcacttgttgtgtgcttttaaggttaccaactctagctttcttgacagctacaatagt |
319 |
Q |
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| T |
41704217 |
ggttcttgtgattaacttgagaaagtattgaaacctcattaagcacttgttgtgtgcttttaaggttaccaactctagctttcttgacagctacaatagt |
41704316 |
T |
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| Q |
320 |
tccatcttgtagttcacctttgtaaacttccccaaagccaccacttcctaggatcctgtcttgtgaaaaacagtttgttgctttcttcaactctttcagt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704317 |
tccatcttgtagttcacctttgtaaacttccccaaagccaccacttcctaggatcctgtcttgtgaaaaacagtttgttgctttcttcaactctttcagt |
41704416 |
T |
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| Q |
420 |
tgaaacattttgtaaggtttctcccctccagtgcttgatttcagcacaatttctctttccttggtctgcttctcc |
494 |
Q |
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| T |
41704417 |
tgaaacattttgtaaggtttctcccctccagtgcttgatttcagcacaatttctctttccttggcctgcttctcc |
41704491 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 494
Target Start/End: Original strand, 1440620 - 1440665
Alignment:
| Q |
449 |
agtgcttgatttcagcacaatttctctttccttggtctgcttctcc |
494 |
Q |
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|||||||| |||||||| |||||||||||| |||||||||| |||| |
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| T |
1440620 |
agtgcttggtttcagcagaatttctctttctttggtctgctactcc |
1440665 |
T |
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