View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11943_low_6 (Length: 489)
Name: NF11943_low_6
Description: NF11943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11943_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 36093257 - 36092777
Alignment:
| Q |
1 |
tatgagaactataattgaaaatatgaagaatgaatgataatatgccaatgtagtagtagtagtgcatgtgattgagataatgaaaatacaggttgggagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36093257 |
tatgagaactataattgaaaatatgaagaatgaatgataatatgccaatgtagtagtagtagtgcatgtgattgagataatgaaaatacaggttgggagt |
36093158 |
T |
|
| Q |
101 |
gatggtagcatttgtaaaaaggagacaaatttgaagaggggctaatgatgcagaaggtgggaactttagataaggacgtgtatggctgtatgcaattata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36093157 |
gatggtagcatttgtaaaaaggagacaaatttgaagaggggctaatgatgcagaaggtgggaactttagataaggacgtgtatggctgtatgcaattata |
36093058 |
T |
|
| Q |
201 |
gataggtcgtgagcaccatcatatgatgatataataattaattaattggtttgagattctagtttggtgtttgtttgaaaaccaagtgtatagtttggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36093057 |
gataggtcgtgagcaccatcatatgatgatataataattaattaattggtttgagactctagtttggtgtttgtttgaaaaccaagtgtatagtttggtt |
36092958 |
T |
|
| Q |
301 |
gcataatgaactacatttata--tataggaattatttggtggtattgacgtaacggaacaacacaacctcaagtgtggcctaaccctagttggttggttt |
398 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36092957 |
gcataatgaactacatttatatatataggaattatttggtggtattgacgtaacggaacaacacaacctcaagtgtggcctgcccctagttggttggttt |
36092858 |
T |
|
| Q |
399 |
tatttcaatttaggttgttggtgacaacatattcaacagaagcatgtgtaaatgtggactatacgggattaatcatctctg |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36092857 |
tatttcaatttaggttgttggtgacaacatattcaacagaagcatgtgtaaatgtggactatacgggattaatcatttctg |
36092777 |
T |
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