View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11943_low_7 (Length: 469)
Name: NF11943_low_7
Description: NF11943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11943_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Complemental strand, 6287644 - 6287202
Alignment:
| Q |
17 |
aggatctgctgagtatgctgagctttctaagaactatcaaaaggcgtttttgagaacaatcccaccgaagaaagacatcctaactaacttgactgttata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6287644 |
aggatctgctgagtatgctgagctttctaagaactatcaaaaggcgtttttgagaacaatcccaccgaagaaagacatcctaactaacttgactgttata |
6287545 |
T |
|
| Q |
117 |
gaagtcttgtcaagacatgcttctgatgaacaataccttggacagagaattgaaggtgataattggacttctgattcacaaccaaaagaggctttcaaga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6287544 |
gaagtcttgtcaagacatgcttctgatgaacaataccttggacagagaattgaaggtgataattggacttctgattcacaaccaaaagaggctttcaaga |
6287445 |
T |
|
| Q |
217 |
ggtttggaaagaagctggctgaaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6287444 |
ggtttggaaagaagctggctgaaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatac |
6287345 |
T |
|
| Q |
317 |
tttgctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatctaaattgggtcatggttattgtgttgctgctttgaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6287344 |
tttgctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatctaaattgggtcatggttattgtgttgctgctttgaa |
6287245 |
T |
|
| Q |
417 |
taacagacgaaacggaattctattccctcaactcctacctatg |
459 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
6287244 |
taacagacgagacggaattctattccctcacctcctacctatg |
6287202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 27 - 384
Target Start/End: Complemental strand, 6273383 - 6273026
Alignment:
| Q |
27 |
gagtatgctgagctttctaagaactatcaaaaggcgtttttgagaacaatcccaccgaagaaagacatcctaactaacttgactgttatagaagtcttgt |
126 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || | |||| |||||| ||||||| ||||||| ||||||| |
|
|
| T |
6273383 |
gagtatgatgagctttctaagaactatcaaaaggcgtttttgagaacaatcacaccaaaagatgacacactaactgacttgaccattatagaggtcttgt |
6273284 |
T |
|
| Q |
127 |
caagacatgcttctgatgaacaataccttggacagagaattgaaggtgataattggacttctgattcacaaccaaaagaggctttcaagaggtttggaaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||| |
|
|
| T |
6273283 |
caagacatgcttctgatgaacaataccttggacagagaattgaaggtgatctttggacttctgattcacaaccattagaggctttcaagagattcggaac |
6273184 |
T |
|
| Q |
227 |
gaagctggctgaaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttat |
326 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6273183 |
aaagttggctgaaattgaacaaaaactcactcaaaggaacaatgatgagactctaaggaatcgatatggaccagtgaagatgccgtatactttgctttat |
6273084 |
T |
|
| Q |
327 |
ccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatctaaa |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
6273083 |
ccttctagtgaggaaggattgacttgcagaggcattcctaacagtatctccatctaaa |
6273026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 25 - 446
Target Start/End: Complemental strand, 6351174 - 6350753
Alignment:
| Q |
25 |
ctgagtatgctgagctttctaagaactatcaaaaggcgtttttgagaacaatcccaccgaagaaagacatcctaactaacttgactgttatagaagtctt |
124 |
Q |
| |
|
||||||||| ||||||| ||||| |||| || ||| | | |||||| |||||| |||| ||||| || | || ||| ||||||| ||||||| ||||| |
|
|
| T |
6351174 |
ctgagtatgatgagcttgctaaggactaccagaagtcttatttgaggacaatcacaccaaagaatgatacacttactgacttgaccattatagaggtctt |
6351075 |
T |
|
| Q |
125 |
gtcaagacatgcttctgatgaacaataccttggacagagaattgaaggtgataattggacttctgattcacaaccaaaagaggctttcaagaggtttgga |
224 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
6351074 |
gtcaaggcatgcttctgatgagcaataccttggagatagaattgaaggtgacaattggacttcagattcacaaccaaaagaagccttcaagaggtttgga |
6350975 |
T |
|
| Q |
225 |
aagaagctggctgaaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgcttt |
324 |
Q |
| |
|
|||||| ||||||||||||| | |||||||||||||||||||| ||||||||| |||| ||||| || |||||||||||||||||||||||| | |||| |
|
|
| T |
6350974 |
aagaagttggctgaaattgaacagaaactcactcaaaggaacaatgatgagacattgagaaatcggtacggaccagtgaagatgccatatactctacttt |
6350875 |
T |
|
| Q |
325 |
atccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatctaaattgggtcatggttattgtgttgctgctttgaataacagac |
424 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
6350874 |
atccttctagtgaggaaggattgacttgccgaggcattcctaatagtatctccatctaaagtggatcatggttgttgtgttgctgctttgaataacagat |
6350775 |
T |
|
| Q |
425 |
gaaacggaattctattccctca |
446 |
Q |
| |
|
| | ||||||| ||||||||| |
|
|
| T |
6350774 |
gtgaaggaattccattccctca |
6350753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 384
Target Start/End: Complemental strand, 6362059 - 6361700
Alignment:
| Q |
25 |
ctgagtatgctgagctttctaagaactatcaaaaggcgtttttgagaacaatcccaccgaagaaagacatcctaactaacttgactgttatagaagtctt |
124 |
Q |
| |
|
||||||||| ||||||| ||||| |||| || ||| | | | |||| ||||| |||| ||||| || | || ||| ||||||| ||||||||||||| |
|
|
| T |
6362059 |
ctgagtatgatgagcttgctaaggactaccagaagtcttatctgaggacaataacacccaagaatgatactcttactgacttgaccattatagaagtctt |
6361960 |
T |
|
| Q |
125 |
gtcaagacatgcttctgatgaacaataccttggacagagaattgaaggtgataattggacttctgattcacaaccaaaagaggctttcaagaggtttgga |
224 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| | || |||||||||||| |
|
|
| T |
6361959 |
gtcaaggcatgcttctgatgagcaataccttggagagagaattgaaggtgatctctggacttctgattcacagccaaaagagtcctttaagaggtttgga |
6361860 |
T |
|
| Q |
225 |
aagaagctggctgaaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgcttt |
324 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||||||| || ||| |||||| |
|
|
| T |
6361859 |
aagaagttggctgaaattgagcaaaaactcattcaaaggaacaatgatgagacactgaggaatcgtaacggaccagtgaagatgccttacactctgcttt |
6361760 |
T |
|
| Q |
325 |
atccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatctaaa |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
6361759 |
atccttctagtgaggaaggattgacttgcagaggcattcccaacagtgtctctatctaaa |
6361700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 7457923 - 7457556
Alignment:
| Q |
17 |
aggatctgctgagtatgctgagctttctaagaactatcaaaaggcgtttttgagaacaatcccaccgaagaaagacatcctaactaacttgactgttata |
116 |
Q |
| |
|
|||||| | |||||||| ||||||| ||||| |||| || ||| | | |||||| |||||| | | ||||| || | ||| ||||||||||| | || |
|
|
| T |
7457923 |
aggatccgttgagtatgatgagcttgctaaggactaccagaagacttatttgaggacaatcaccgcaaagaatgatacccttactaacttgaccatctta |
7457824 |
T |
|
| Q |
117 |
gaagtcttgtcaagacatgcttctgatgaacaataccttggacagagaattgaaggtgataattggacttctgattcacaaccaaaagaggctttcaaga |
216 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| | ||||| |
|
|
| T |
7457823 |
gaggtcttgtcaaggcatgcttctgatgaacaataccttggagagagaattgaaggtgatctctggacttctgattcacaaccaaaacaggcctacaaga |
7457724 |
T |
|
| Q |
217 |
ggtttggaaagaagctggctgaaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatac |
316 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| |||| |||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
7457723 |
agtttggaaagaagttggctgaaatcgagaaaaacctcattcaaaggaacaatgatgagacactgaggaatcgaaatggacctgtgaagatgccatatac |
7457624 |
T |
|
| Q |
317 |
tttgctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatctaaa |
384 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
7457623 |
actgctttatcctactagtgaggaaggattgacttccagaggcattcccaacagtgtctccatctaaa |
7457556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 7470325 - 7469958
Alignment:
| Q |
17 |
aggatctgctgagtatgctgagctttctaagaactatcaaaaggcgtttttgagaacaatcccaccgaagaaagacatcctaactaacttgactgttata |
116 |
Q |
| |
|
|||||| | ||| |||| ||||||| ||||| |||| || ||| | | |||||| |||||| | | ||||| || | ||| ||||||||||| | || |
|
|
| T |
7470325 |
aggatccgttgaatatgatgagcttgctaaggactaccagaagacttatttgaggacaatcaccgcaaagaatgatacccttactaacttgaccatctta |
7470226 |
T |
|
| Q |
117 |
gaagtcttgtcaagacatgcttctgatgaacaataccttggacagagaattgaaggtgataattggacttctgattcacaaccaaaagaggctttcaaga |
216 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |||| | ||||| |
|
|
| T |
7470225 |
gaggtcttgtcaaggcatgcttctgatgaacaataccttggagagagaattgaaggtgatctctggacttctgattcacagccaaaacaggcctacaaga |
7470126 |
T |
|
| Q |
217 |
ggtttggaaagaagctggctgaaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatac |
316 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||| |
|
|
| T |
7470125 |
agtttggaaagaagttgtctgaaattgagaaaaacctcattcaaaggaacaatgatgagacactgaggaatcgaaatggacctgtgaagatgtcatatac |
7470026 |
T |
|
| Q |
317 |
tttgctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatctaaa |
384 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |||| ||||||| |
|
|
| T |
7470025 |
actgctttatcctactagtgaggaaggattgacttccagaggcattcccaacagtgtctctatctaaa |
7469958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 21 - 379
Target Start/End: Complemental strand, 6320268 - 6319910
Alignment:
| Q |
21 |
tctgctgagtatgctgagctttctaagaactatcaaaaggcgtttttgagaacaatcccaccgaagaaagacatcctaactaacttgactgttatagaag |
120 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| ||||||| | |||| |||||| |||| || || || | ||||||| || | || | ||||| | |
|
|
| T |
6320268 |
tctgctgagtatgacgagctttctaagaactttcagaaggcgtatctgaggacaatcacaccaaaaaatgataccctaactgaccttacaatcatagagg |
6320169 |
T |
|
| Q |
121 |
tcttgtcaagacatgcttctgatgaacaataccttggacagagaattgaaggtgataattggacttctgattcacaaccaaaagaggctttcaagaggtt |
220 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||||||| ||| ||| |||||||||||||| |
|
|
| T |
6320168 |
tcttgtcaaggcatgcttctgatgagcaataccttggacagagaaatgaaggtgaggcttggacttttgattcacagccattagaagctttcaagaggtt |
6320069 |
T |
|
| Q |
221 |
tggaaagaagctggctgaaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttg |
320 |
Q |
| |
|
||||| |||| |||||||||||||| ||| |||| |||||||||| |||||| || |||| || || || || || |||||||||||||| ||| || |
|
|
| T |
6320068 |
tggaaggaagttggctgaaattgaggcaaagctcatcaaaaggaacaatgatgagtcattgagaaaccgatacgggcctgtgaagatgccatacactctg |
6319969 |
T |
|
| Q |
321 |
ctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccat |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
6319968 |
ctttatccttctagtgaggaaggattgactggcagaggcattcctaatagtatctccat |
6319910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 21 - 384
Target Start/End: Complemental strand, 6330730 - 6330367
Alignment:
| Q |
21 |
tctgctgagtatgctgagctttctaagaactatcaaaaggcgtttttgagaacaatcccaccgaagaaagacatcctaactaacttgactgttatagaag |
120 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| || | | || |||||| |||| || || || | ||| ||| || | || | |||| | |
|
|
| T |
6330730 |
tctgctgagtatgccgagctttctaagaactttcaaaaggtgtatctaaggacaatcacaccaaaaaatgataccctcactgaccttacgatcttagagg |
6330631 |
T |
|
| Q |
121 |
tcttgtcaagacatgcttctgatgaacaataccttggacagagaattgaaggtgataattggacttctgattcacaaccaaaagaggctttcaagaggtt |
220 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||||||||||| |||||| || ||||||||| |||||||| ||| ||| |||||||||||||| |
|
|
| T |
6330630 |
tcttatcaaggcatgcttctgatgagcaataccttggacagagaaatgaaggcgaggtttggacttcagattcacagccattagaagctttcaagaggtt |
6330531 |
T |
|
| Q |
221 |
tggaaagaagctggctgaaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttg |
320 |
Q |
| |
|
||||| |||| |||||||||||||| ||| |||| | |||||||||| |||||| || |||| || || || || || ||||| |||||||| ||| || |
|
|
| T |
6330530 |
tggaaggaagttggctgaaattgaggtaaagctcattgaaaggaacaatgatgagtcattgagaaaccgatacgggcctgtgaatatgccatacactctg |
6330431 |
T |
|
| Q |
321 |
ctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatctaaa |
384 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6330430 |
ctttatccttctagtgagaaaggattgacttgcagaggcattcctaatagtatctccatctaaa |
6330367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 6423099 - 6422734
Alignment:
| Q |
17 |
aggatctgctgagtatgctgagctttctaagaactatcaaaaggcgtttttgagaacaatcccaccgaagaaagacatcctaactaacttgactgttata |
116 |
Q |
| |
|
|||||| || ||||||||||||||||||||| |||| || ||||| | ||||| |||||| |||| |||| || | ||| || || | || |||| |
|
|
| T |
6423099 |
aggatcagccgagtatgctgagctttctaaggactaccagaaggcatatttgaagacaatcacacccaagagtgatacccttacagaccttaccattatt |
6423000 |
T |
|
| Q |
117 |
gaagtcttgtcaagacatgcttctgatgaacaataccttggacagagaattgaaggtgataattggacttctgattcacaaccaaaagaggctttcaaga |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||| |||| ||||||||||| | ||||| |
|
|
| T |
6422999 |
gaagtcttgtcaaggcatgcttctgatgagcaataccttggggagagaatcgaaggtgatctttggacttctgatgcacagccaaaagaggcctacaaga |
6422900 |
T |
|
| Q |
217 |
ggtttggaaagaagctggctgaaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatac |
316 |
Q |
| |
|
||||| || |||| |||||||||||||| |||| || | |||||||| || ||| || |||| || || || || || |||||||||||||| || |
|
|
| T |
6422899 |
agtttgcaaggaagttggctgaaattgaggaaaagctagttaaaaggaacgctgacgagtcattgagaaaccgatacgggcctgtgaagatgccatacac |
6422800 |
T |
|
| Q |
317 |
tttgctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatcta |
382 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| | |||||||| |
|
|
| T |
6422799 |
tctgctttatccttctagtgaagaaggattgactttcagaggcattcccaacagtgtttccatcta |
6422734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 123 - 382
Target Start/End: Complemental strand, 6389718 - 6389459
Alignment:
| Q |
123 |
ttgtcaagacatgcttctgatgaacaataccttggacagagaattgaaggtgataattggacttctgattcacaaccaaaagaggctttcaagaggtttg |
222 |
Q |
| |
|
||||||| ||||| ||||||||| |||||| ||||||| ||||| ||||||||| |||||||| |||||| | ||| |||||| ||||||| ||||| |
|
|
| T |
6389718 |
ttgtcaacacatgtttctgatgagcaatacattggacacagaatcgaaggtgatctttggacttacgattcagagccagtagaggccttcaagaagtttg |
6389619 |
T |
|
| Q |
223 |
gaaagaagctggctgaaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgct |
322 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||| | |||||||||||||||| || |||| || | |||| ||||||||||||||||| ||| |||| |
|
|
| T |
6389618 |
gaaagaagttggctgaaattgagcaaaagctcattgaaaggaacaacgatgaatcattgagaaacaggaatgggccagtgaagatgccatacactgtgct |
6389519 |
T |
|
| Q |
323 |
ttatccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatcta |
382 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||||||||||||||| ||| |||||||||| |
|
|
| T |
6389518 |
ctatccttcaagtgagccaggattgactttcagaggcattcccaacagtgtctccatcta |
6389459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 131 - 382
Target Start/End: Complemental strand, 6408959 - 6408708
Alignment:
| Q |
131 |
acatgcttctgatgaacaataccttggacagagaattgaaggtgataattggacttctgattcacaaccaaaagaggctttcaagaggtttggaaagaag |
230 |
Q |
| |
|
||||| ||||||||| |||||| ||||||| ||||| ||||||||| |||||||| |||||| | ||| |||||| ||||||| ||||||||||||| |
|
|
| T |
6408959 |
acatgtttctgatgagcaatacattggacacagaatcgaaggtgatctttggacttacgattcagagccagtagaggccttcaagaagtttggaaagaag |
6408860 |
T |
|
| Q |
231 |
ctggctgaaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttatcctt |
330 |
Q |
| |
|
|||||||||||||| |||| |||| | |||||||||||||||| || |||| || | |||| || |||||||||||||| ||| |||| ||||||| |
|
|
| T |
6408859 |
ttggctgaaattgagcaaaagctcattgaaaggaacaacgatgaatcattgagaaacaggaatgggcctgtgaagatgccatacactgtgctctatcctt |
6408760 |
T |
|
| Q |
331 |
ctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatcta |
382 |
Q |
| |
|
| |||||| ||||||||||| ||||||||||||||| ||| |||||||||| |
|
|
| T |
6408759 |
caagtgagccaggattgactttcagaggcattcccaacagtgtctccatcta |
6408708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 384
Target Start/End: Complemental strand, 6368711 - 6368475
Alignment:
| Q |
148 |
aataccttggacagagaattgaaggtgataattggacttctgattcacaaccaaaagaggctttcaagaggtttggaaagaagctggctgaaattgagaa |
247 |
Q |
| |
|
||||||||||||| |||| |||||||||| ||||||||||||| || | ||| ||| || | ||| | ||||| |||||| || |||||||||| | |
|
|
| T |
6368711 |
aataccttggacaaagaactgaaggtgatctttggacttctgatccaaagccagtagaagcctacaaaaagtttgcaaagaaattgattgaaattgagga |
6368612 |
T |
|
| Q |
248 |
aaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttatccttctagtgaggaaggattg |
347 |
Q |
| |
|
| | ||| |||||||||||| ||||| || ||| || | ||||| || |||||| | ||||| ||| | ||||||||||| |||| ||||||| |
|
|
| T |
6368611 |
agagttcattcaaaggaacaataatgagtcattgaaaaacaggtatgggcctgtgaagtttccatacactcttctttatccttccagtggaccaggattg |
6368512 |
T |
|
| Q |
348 |
acttgcagaggcattcccaatagtatctccatctaaa |
384 |
Q |
| |
|
||| ||||||| |||||||| ||| |||||||||||| |
|
|
| T |
6368511 |
actggcagagggattcccaacagtgtctccatctaaa |
6368475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 383
Target Start/End: Complemental strand, 6261782 - 6261726
Alignment:
| Q |
327 |
ccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatctaa |
383 |
Q |
| |
|
||||| |||||||||||| | |||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
6261782 |
ccttcaagtgaggaaggacttacttttagaggaattcccaacagtatctccatctaa |
6261726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 381
Target Start/End: Complemental strand, 42691927 - 42691749
Alignment:
| Q |
203 |
agaggctttcaagaggtttggaaagaagctggctgaaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtg |
302 |
Q |
| |
|
|||||| || |||| ||| ||||| ||| |||| ||||||||||| || || |||| || ||||| ||||||| || || | ||| |||||| || |
|
|
| T |
42691927 |
agaggcctttaagaagttcggaaacaagttggcagaaattgagaagaatcttgctcagagaaacaatgatgagaagctaagacaccgtcttggaccggtt |
42691828 |
T |
|
| Q |
303 |
aagatgccatatactttgctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatct |
381 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||| | |||| ||||| ||||| ||||||||||| |||| |
|
|
| T |
42691827 |
cagatgccttatactttgcttcatccttctagtgaggaaggactaacttttagaggaattcctaatagtatctctatct |
42691749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 36746297 - 36746365
Alignment:
| Q |
303 |
aagatgccatatactttgctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagt |
371 |
Q |
| |
|
|||||||| || |||||||||| ||| | |||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
36746297 |
aagatgccctacactttgcttttacctaccagtggagaaggcttgacttgcagaggaattcccaatagt |
36746365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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