View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11944_high_2 (Length: 585)
Name: NF11944_high_2
Description: NF11944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11944_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 263 - 571
Target Start/End: Complemental strand, 49876479 - 49876170
Alignment:
| Q |
263 |
ctacttaacttactcttgttttttagaatgataacttaacttacttgctggcaatttgttggattatgtagttagcgataactaacataataaactatat |
362 |
Q |
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| T |
49876479 |
ctacttaacttactcttgttttttagaatgataacttaacttacttgctggcaatttgttggattatgtagttagcgataactaacataataaactatat |
49876380 |
T |
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| Q |
363 |
atggtg-aagaatattagtttccacgtaaggaaatgtgttggttaatgataacttataacttccttgttggcaagttgttggattatgtatttagtttgt |
461 |
Q |
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| T |
49876379 |
atggtggaagaatattagtttccacgtaaggaaatgtgttggttaatgataacttataacttccttgttggcaagttgttggattatgtatttagtttgt |
49876280 |
T |
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| Q |
462 |
ataaatcaacatacatggatgtggatatgaatgatgacggaagtcccaaacattattagattagtagagattttcatttgttcaaattttgaactttcct |
561 |
Q |
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| T |
49876279 |
ataaatcaacatacatggatgtggatatgaatgatgacggaagtcccaaacattattagattagtagagattttcatttgttcaaattttgaactttcct |
49876180 |
T |
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| Q |
562 |
tctgtgctcc |
571 |
Q |
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| T |
49876179 |
tctgtgctcc |
49876170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 49876731 - 49876516
Alignment:
| Q |
30 |
ggggaatttaatgatgaaaatggtgcgaaaggtggcgagtagagcgaggaaaagagcggaatatttgcagagattgagagctattgaagaaggatgattc |
129 |
Q |
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| T |
49876731 |
ggggaatttgatgatgaaaatggtgtgaaaggtggcgagtagagcgaggaaaagagcggaatatttgcagagattgagagctattgaagaaggatgattc |
49876632 |
T |
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| Q |
130 |
tgaaggaaattgaagagatggttgattttgtgagtcacaggaacttgcacttgcatcatttttagaagaacaatggaatggaatggaaaggaaaataata |
229 |
Q |
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| T |
49876631 |
tgaaggaaattgaagagatggttgattttgtgagtcacaggaacttgcacttgcatcatttttagaagaacaatggaatggaaaggaaa--ataataata |
49876534 |
T |
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| Q |
230 |
ataatggtgatgatgatg |
247 |
Q |
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| T |
49876533 |
ataatggtgatgatgatg |
49876516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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