View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11944_high_4 (Length: 392)
Name: NF11944_high_4
Description: NF11944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11944_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 33857019 - 33856789
Alignment:
| Q |
17 |
gaatcaaaataaatctggtataataggaattaattaatcgatagagatttcaaatgtatgaatagtgaaaatagaactcaattcaaaaaagcccataacc |
116 |
Q |
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| T |
33857019 |
gaatcaaaataaatctggtataataggaattaattaattgatagagatttcaaatgtatgaatagtgaaaatagaactcaattcaaaaaagcccataacc |
33856920 |
T |
|
| Q |
117 |
caaagtcaacccactaatcaatttcaacggaacaatccgaaaatttcgtcttcccgcttccccccactatctcaaaatttaagcgcctttccttaattac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33856919 |
caaagtcaacccactaatcaatttcaacggaacaatccgaaaatttcgtcttcccgcttccccccactatctcaaaatttaagcgcctttccttaattac |
33856820 |
T |
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| Q |
217 |
ttttcccactttctttatatttcccaaaacc |
247 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
33856819 |
ttttcccactttctttatatttcccaaaacc |
33856789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 309 - 376
Target Start/End: Complemental strand, 33856727 - 33856660
Alignment:
| Q |
309 |
gccattttcaccatggctgggaagcgtaaaactagctcaaaaaccaccacatccggcaatgccgttac |
376 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33856727 |
gccattttcaccatggctgggaagcgtaaaactagctcaaaaaccaccacatccggcaatgctgttac |
33856660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 28213667 - 28213716
Alignment:
| Q |
309 |
gccattttcaccatggctgggaagcgtaaaactagctcaaaaaccaccac |
358 |
Q |
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| T |
28213667 |
gccattttcaccatggatgagaagcgtaaaactaggtcaaaaacccccac |
28213716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 31489506 - 31489569
Alignment:
| Q |
102 |
aaaaagcccataacccaaagtcaacccac-taatcaatttcaacggaacaatccgaaaatttcg |
164 |
Q |
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|
||||||||||||| ||||||||||||||| ||||||||| |||| | | ||||| ||||||||| |
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| T |
31489506 |
aaaaagcccataaaccaaagtcaacccacgtaatcaattccaaccgtaaaatcctaaaatttcg |
31489569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 26141646 - 26141766
Alignment:
| Q |
108 |
cccataacccaaagtcaacccac-taatcaatttcaa-cggaacaatccgaaaatttcgtcttcccgcttccccccactatctcaaaatttaagcgcc-t |
204 |
Q |
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||||||| ||||||||||||||| ||||||||| ||| || || ||||| ||||||||| || |||||| ||| || ||||||| ||||||||| || | |
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| T |
26141646 |
cccataaaccaaagtcaacccacgtaatcaattccaaccgtaaaaatcctaaaatttcg--tttccgctttccctcattatctcagaatttaagcacctt |
26141743 |
T |
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| Q |
205 |
ttccttaattacttttcccactt |
227 |
Q |
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||||||| ||| |||||||||| |
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| T |
26141744 |
ttccttatatacctttcccactt |
26141766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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