View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11944_low_1 (Length: 770)
Name: NF11944_low_1
Description: NF11944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11944_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 234 - 768
Target Start/End: Complemental strand, 49862370 - 49861845
Alignment:
| Q |
234 |
gtcatcaatcaactcactgagtctcctccctttcacctcattctgcatctgcggcacaatccaacgacggagaaatgcttggtttcctctctctgctaag |
333 |
Q |
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| T |
49862370 |
gtcatcaatcaactcaccgagtctcctccctttcacctcgttctgca---------caatccaacgacggagaaatgcttggtttcctctctctgctaag |
49862280 |
T |
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| Q |
334 |
gattctcgtgaacgacaaaacacgactcattggtgaccgaaacgatgatggtgaatcacaactcgactctcccacagcaaaactcttgcaatcggattca |
433 |
Q |
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| T |
49862279 |
gattctcgtgaacgacaaaacacgactcattggtgaccgaaacgatgatggtgaatcacaactcgactctcccacagcaaaactcttgcaatcggattca |
49862180 |
T |
|
| Q |
434 |
ctccttctcggaatctcaacggtaatgtcaaccaatgaagattgcttctcatcagaacatgaggaagaacaagaagaagaaaattccgatacagactggt |
533 |
Q |
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| T |
49862179 |
ctccttctcggaatctcaacggtaatgtcaaccgatgaagattgcttctcatcagaacatgaggaagaacaagaagaagaaaattccgatacagaccggt |
49862080 |
T |
|
| Q |
534 |
tcatttcatcaccagaactcgaacccaaaaccaattccggttcacacatatcaattgtcacttcttgtctggtcgcttgaaccggcgcagcctccacggg |
633 |
Q |
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| T |
49862079 |
tcatttcttcaccagaactcgaacccaaaaccaattccggttcacacatatcaattgtcacttcttgtctggtcgcttgaaccggcgcagcctccacggg |
49861980 |
T |
|
| Q |
634 |
cgctctacaaagcggacatgtagaatgagactgaaaccacatatcaatacaatcaatatgaaaactatgattacatttgggtaaaacccgacctgtttct |
733 |
Q |
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| T |
49861979 |
cgctctacaaagcggacatgtagaatgagactgaaaccacatatcaatacaatcaatatgaaaactatgattacatttgggtaaaacccgacctgtttct |
49861880 |
T |
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| Q |
734 |
ccatcttcaatctccgataaacaacccgcgcattc |
768 |
Q |
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| T |
49861879 |
ccatcttcaaactccgataaacaaacagcgcattc |
49861845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 49862470 - 49862371
Alignment:
| Q |
96 |
aattatgacgagacagtagtgatgtttgagcgacatggcaaatgatgatggtcatccctcgccgttcactttataatttgtgttgcgacattcatgcact |
195 |
Q |
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| T |
49862470 |
aattatgacgagacagtagcgatgtttgagc---atggcaaatgatgatcgtcatccctccccgttgacattgtaatttgtgttgcaacattcatgcact |
49862374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 49862509 - 49862465
Alignment:
| Q |
31 |
catgtcatgtcactcgaatattgctaccgtcgtcggttcaattat |
75 |
Q |
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| T |
49862509 |
catgccatgtcactcgaatattgctaccttcctcggttcaattat |
49862465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 629 - 732
Target Start/End: Original strand, 13998859 - 13998962
Alignment:
| Q |
629 |
acgggcgctctacaaagcggacatgtagaatgagactgaaaccacatatcaatacaatcaatatgaaaactatgattacatttgggtaaaacccgacctg |
728 |
Q |
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|||||||| | |||||| ||||| || |||||| |||||||||||||||||||| ||| ||||||||||||| || |||||||||||||||||||| | |
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| T |
13998859 |
acgggcgcccgacaaagaggacacgtgtcatgagaatgaaaccacatatcaatacactcagtatgaaaactatgtttgcatttgggtaaaacccgacccg |
13998958 |
T |
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| Q |
729 |
tttc |
732 |
Q |
| |
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|||| |
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| T |
13998959 |
tttc |
13998962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 638 - 719
Target Start/End: Original strand, 8434388 - 8434469
Alignment:
| Q |
638 |
ctacaaagcggacatgtagaatgagactgaaaccacatatcaatacaatcaatatgaaaactatgattacatttgggtaaaa |
719 |
Q |
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|||||||| ||||| ||||||||||| ||||||||||||||||||||||| | |||||| | |||||| ||||| ||||||| |
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| T |
8434388 |
ctacaaagaggacaagtagaatgagattgaaaccacatatcaatacaatctaaatgaaacccatgattgcattttggtaaaa |
8434469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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