View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11944_low_3 (Length: 500)
Name: NF11944_low_3
Description: NF11944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11944_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Original strand, 41066783 - 41067250
Alignment:
| Q |
17 |
gaatataacctttaaaacgaaggtgttaaatttgaaggnnnnnnngattaaattgaccgacattgttcaattaatgcgactaggctgctatttcataaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066783 |
gaatataacctttaaaacgaaggtgttaaatttgaaggaaaaaaagattaaattgaccgacattgttcaattaatgcgactaggctgctatttcataaat |
41066882 |
T |
|
| Q |
117 |
ttgaggctaaattgagtaatccccataatttcaaggactaaaatgcctacgtactcttagaaatcacatggaacaaacaaataaacaacaaagatgttga |
216 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066883 |
ttgaggctaaattgactaatcctcataatttcaaggactaaaatgcctacgtactcttagaaatcacatggaacaaacaaataaacaacaaagatgttga |
41066982 |
T |
|
| Q |
217 |
aaatacctatatctccttgtttagcagcaatatgaaatgcatcaaaaccgtttcttgctttaattccagcacaagcaagatcataatattgaatcattcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066983 |
aaatacctatatctccttgtttagcagcaatatgaaatgcatcaaaaccgtttcttgctttaattccagcacaagcaagatcataatattgaatcattcc |
41067082 |
T |
|
| Q |
317 |
ccgaacgacatcaatataaccatactcagcagcaacataaagagctgtttctccatcttggttctgcctagccaataattcaagcaattcatcctcttga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41067083 |
ccgaacgacatcaatataaccatactcagcagcaacataaagagctgtttctccatcttggttctgcctagccaataattcaagcaattcatcctcttga |
41067182 |
T |
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| Q |
417 |
gcatcattaagaatatccctcacaacatctaaattccctgatcttgctgcagaatgcaaaggtgtatc |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41067183 |
gcatcattaagaatatccctcacaacatctaaattccctgatcttgctgcagaatgcaaaggtgtatc |
41067250 |
T |
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Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 218 - 383
Target Start/End: Original strand, 23033924 - 23034089
Alignment:
| Q |
218 |
aatacctatatctccttgtttagcagcaatatgaaatgcatcaaaaccgtttcttgctttaattccagcacaagcaagatcataatattgaatcattccc |
317 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| | |
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| T |
23033924 |
aatacctaaatccccttgtttagcagcaatatgaagtgcatcaaaaccatttcttgctttaattccagcatcagcaagatcataatactgaatcatctct |
23034023 |
T |
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| Q |
318 |
cgaacgacatcaatataaccatactcagcagcaacataaagagctgtttctccatcttggttctgc |
383 |
Q |
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| ||| | ||||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||| |
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| T |
23034024 |
ctaaccatatcaacataaccatactcagcagcaacataaagtgctgtttctccaccttgattctgc |
23034089 |
T |
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