View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11944_low_5 (Length: 379)
Name: NF11944_low_5
Description: NF11944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11944_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 39077348 - 39077702
Alignment:
| Q |
1 |
gaacatcatagaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctgtcttttctacc |
100 |
Q |
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| T |
39077348 |
gaacatcatagaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctgtcttttctacc |
39077447 |
T |
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| Q |
101 |
tgttgcccttacaatgtggcctccttgaacttgaactatttctcctcctgtgctcttcattcccattaatcctcttgtataaattttgtgtctttgaatt |
200 |
Q |
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| T |
39077448 |
tgtcgcccttacaatgtggcctccttgaacttgaactatttctcctcctgtgctcttcattcccattaatcctcttgtataaattttgtgtctttgaatt |
39077547 |
T |
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| Q |
201 |
tgtaaagatagttctattgtgtttctgtttcttgcgtatgcatattgatatttgtgtagtgtgaaatttgatgccacttgagtcaatgtatatgcttcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39077548 |
tgtaaagatagttctattgtgtttctgtttcttgcgtatgcatattgatatttgtgtagtgtgaaatttgatgccacttgagtcaatgtatatgcttcaa |
39077647 |
T |
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| Q |
301 |
aatttgttcttgttttgtgattattgatgcacttgcttgttgataatgacaacca |
355 |
Q |
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| T |
39077648 |
aatttgttcttgttttgtgattattgatgcacttgcttgttgataatgacaacca |
39077702 |
T |
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