View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11944_low_7 (Length: 318)
Name: NF11944_low_7
Description: NF11944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11944_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 49445110 - 49444803
Alignment:
| Q |
1 |
ctgttgggattggtggcttaaactgtgaacagttatggtcatgaactttatgtcagtgcagaagtttaggaaatttgttccttaagactcgccaccctgg |
100 |
Q |
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| T |
49445110 |
ctgttgggactggtggcttaaactgtgaaccgttatggtcatgaactttatgtcagtgcagaagtttaggaaatttgttccttaagactcgccaccctgg |
49445011 |
T |
|
| Q |
101 |
cagcctgtttctttgacttgtttatgaattcaattagctagatttatgtctatccttttttgggtggttgtatgttaaattatgatttgatgcataacct |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49445010 |
cagcctgtttctctgacttgtttatgaattcaattagctagatttatgtctatccttttttgggtggttgtatgttaaattatgatttgatgcataacct |
49444911 |
T |
|
| Q |
201 |
catggcttgagggtgaaagttgcaaattagtgtttctctttgacacagaagtatggacaaagcctaaacaaatagttgatttttcaaaggtatctttatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49444910 |
catggcttgagggtgaaagttgcaaattagtgtttctctttgacacagaagtatggacaaagcctaaacaaatagttgatttttcaaaggtatctttatt |
49444811 |
T |
|
| Q |
301 |
tgtctctg |
308 |
Q |
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|||||||| |
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| T |
49444810 |
tgtctctg |
49444803 |
T |
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