View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11944_low_9 (Length: 257)
Name: NF11944_low_9
Description: NF11944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11944_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 6505762 - 6505990
Alignment:
| Q |
17 |
aacaatttcatcgcgtgattcgtcttttacacctttgcttgagtgccaagtcattaaaacaggttctgttttcaaaatccatgaatcaccaaccacacca |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6505762 |
aacaatttcattgcgtgattcgtcttttacacctttgcttgagtgccaagtcatggaaacaggttctgttttcaaaatccatgaatcaccaacaacacca |
6505861 |
T |
|
| Q |
117 |
acaaggtctccatcaatgcttgtatacttgaaatcatcaagaacagttacatcactgtcactttttgacagaagttgaagatgaagagggtgtgctaaca |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6505862 |
acaaggtcaccatcaatgcttgtatacttgaaatcatcaagaacagttacatcactctcactttttgacagaagttgaagatgaagagggtgtgctaata |
6505961 |
T |
|
| Q |
217 |
gtaacaaatcatctgaaccattcttctca |
245 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |
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|
| T |
6505962 |
ataacaaatcacctgaaacattcttctca |
6505990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 6516000 - 6515772
Alignment:
| Q |
17 |
aacaatttcatcgcgtgattcgtcttttacacctttgcttgagtgccaagtcattaaaacaggttctgttttcaaaatccatgaatcaccaaccacacca |
116 |
Q |
| |
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|||||||||||| ||||||| ||||||| |||||||||||| |||||||| | ||| || || |||||||||||||||||||||||||| |||||| |
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| T |
6516000 |
aacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttacagaaatcggatcggttttcaaaatccatgaatcaccaacaacacca |
6515901 |
T |
|
| Q |
117 |
acaaggtctccatcaatgcttgtatacttgaaatcatcaagaacagttacatcactgtcactttttgacagaagttgaagatgaagagggtgtgctaaca |
216 |
Q |
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|
||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| | |||||| || | |||||||| |||||||||||||||||||| |
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| T |
6515900 |
acaaggtctccatcaatgctttgatacttgaaatcatccaaaacagttacatcacttttacttttagataaaagttgaatatgaagagggtgtgctaaca |
6515801 |
T |
|
| Q |
217 |
gtaacaaatcatctgaaccattcttctca |
245 |
Q |
| |
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|||||||||| ||||||| ||||||||| |
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|
| T |
6515800 |
ataacaaatcacctgaacctttcttctca |
6515772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 6472942 - 6472808
Alignment:
| Q |
17 |
aacaatttcatcgcgtgattcgtcttttacacctttgcttgagtgccaagtcattaaaacaggttctgttttcaaaatccatgaatcaccaaccacacca |
116 |
Q |
| |
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||||||||| || ||||||| |||||||||||||||||||| |||||||| || ||||||| ||||||||||||| ||||||||||||||| || ||| |
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| T |
6472942 |
aacaatttcgtcatgtgattcttcttttacacctttgcttgaatgccaagtaatagaaacaggatctgttttcaaaagccatgaatcaccaacaactcca |
6472843 |
T |
|
| Q |
117 |
acaaggtctccatcaatgcttgtatacttgaaatc |
151 |
Q |
| |
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||||| || |||||||||||| ||||||| ||||| |
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|
| T |
6472842 |
acaagttcaccatcaatgcttttatacttaaaatc |
6472808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 243
Target Start/End: Complemental strand, 6520410 - 6520237
Alignment:
| Q |
73 |
aaacaggttctgttttcaaaatccatgaatcaccaaccacaccaacaaggtctccatcaatgcttgtatacttgaaatca-tcaagaacagttacatcac |
171 |
Q |
| |
|
||||||| || |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |||| || ||| ||||||| |
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|
| T |
6520410 |
aaacaggatcagttttcaaaaaccatgaatcaccaatgacaccaacaaggtctccatcaatgcttttatacttaaaatcactcaa-aatagtaacatcac |
6520312 |
T |
|
| Q |
172 |
tgtc---actttttgacagaagttgaagatgaagagggtgtgctaacagtaacaaatcatctgaaccattcttct |
243 |
Q |
| |
|
|| | | | ||| |||||||| ||| | ||||||||||||||||| ||||||| ||||||| ||||||| |
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|
| T |
6520311 |
aatcaatagtgtcacacaaaagttgaatatgtaaagggtgtgctaacagtagcaaatcacctgaacccttcttct |
6520237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 6497008 - 6497091
Alignment:
| Q |
73 |
aaacaggttctgttttcaaaatccatgaatcaccaaccacaccaacaaggtctccatcaatgcttgtatacttgaaatcatcaa |
156 |
Q |
| |
|
||||||| || |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
6497008 |
aaacaggatcagtttccaaaagccatgaatcaccaacaacaccaacaaggtctccatcaatgctttgatacttaaaatcatcaa |
6497091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 13035627 - 13035513
Alignment:
| Q |
31 |
gtgattcgtcttttacacctttgcttgagtgccaagtcattaaaacaggttctgttttcaaaatccatgaatcaccaaccacaccaacaaggtctccatc |
130 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||| | |||||| || |||||||||| ||||||||||||||| || |||||||| || ||||| |
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|
| T |
13035627 |
gtgattcttcttttacacctttgcttgtatgccaagttacagaaacagaatcggttttcaaaagccatgaatcaccaacaactccaacaagttcaccatc |
13035528 |
T |
|
| Q |
131 |
aatgcttgtatactt |
145 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
13035527 |
aatgcttttatactt |
13035513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 6461663 - 6461583
Alignment:
| Q |
74 |
aacaggttctgttttcaaaatccatgaatcaccaaccacaccaacaaggtctccatcaatgcttgtatacttgaaatcatc |
154 |
Q |
| |
|
|||||| || |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
6461663 |
aacaggatcagtttccaaaagccatgaatcaccaacaacaccaacaaggtctccatcaatgctttgatacttaaaatcatc |
6461583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 1841788 - 1841655
Alignment:
| Q |
17 |
aacaatttcatcgcgtgattcgtcttttacacctttgcttgagtgccaagtcattaaaacaggttctgttttcaaaatccatgaatcaccaaccacacca |
116 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||||||| |||||||| || || || | || |||||||||||||||||||||||||| ||| |
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|
| T |
1841788 |
aacaatttcatcatgaaattcttcttttacacctttgcttgaatgccaagttatggaagcatgatcggttttcaaaatccatgaatcaccaacaacattg |
1841689 |
T |
|
| Q |
117 |
acaaggtctccatcaatgcttgtatacttgaaat |
150 |
Q |
| |
|
||||| ||| ||| ||||||| ||||||| |||| |
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|
| T |
1841688 |
acaagctctgcataaatgcttttatacttaaaat |
1841655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 6457722 - 6457839
Alignment:
| Q |
84 |
gttttcaaaatccatgaatcaccaaccacaccaacaaggtctccatcaatgcttgtatacttgaaatcatcaagaacagttacatcactgtcactttttg |
183 |
Q |
| |
|
|||||||| | |||||| || ||||| ||||||||||| || || ||||||||| |||||| ||||||| ||| ||||||||||||| ||||||| | |
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|
| T |
6457722 |
gttttcaataaccatgagtctccaacaacaccaacaagctcgccgtcaatgctttgatacttcaaatcatgaagcacagttacatcacagtcacttgcag |
6457821 |
T |
|
| Q |
184 |
acagaagttgaagatgaa |
201 |
Q |
| |
|
||| |||||||||||||| |
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|
| T |
6457822 |
acaaaagttgaagatgaa |
6457839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 6465679 - 6465748
Alignment:
| Q |
84 |
gttttcaaaatccatgaatcaccaaccacaccaacaaggtctccatcaatgcttgtatacttgaaatcat |
153 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||||||| || |||||||| ||| ||||||| ||||||| |
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|
| T |
6465679 |
gttttcaacaaccatgaatcaccaacaacaccaacaagatcaccatcaatacttctatacttaaaatcat |
6465748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 6528545 - 6528613
Alignment:
| Q |
84 |
gttttcaaaatccatgaatcaccaaccacaccaacaaggtctccatcaatgcttgtatacttgaaatca |
152 |
Q |
| |
|
|||||||||||||| |||||| |||| | |||||||| || |||||||||||| |||||||||||||| |
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|
| T |
6528545 |
gttttcaaaatccacgaatcagcaacaatgccaacaagatcgccatcaatgcttttatacttgaaatca |
6528613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 6472785 - 6472714
Alignment:
| Q |
174 |
tcactttttgacagaagttgaagatgaagagggtgtgctaacagtaacaaatcatctgaaccattcttctca |
245 |
Q |
| |
|
|||||||| |||| ||| || |||||||||||||||||||||| | |||||| ||||||| ||||||||| |
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|
| T |
6472785 |
tcacttttagacataagctggagatgaagagggtgtgctaacatcagtaaatcacctgaacctttcttctca |
6472714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 6528656 - 6528708
Alignment:
| Q |
192 |
tgaagatgaagagggtgtgctaacagtaacaaatcatctgaaccattcttctc |
244 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | |||| |||||||| |
|
|
| T |
6528656 |
tgaagatgaagagggtgtgctaacatcaacaaatcaccccaacccttcttctc |
6528708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 4046578 - 4046710
Alignment:
| Q |
84 |
gttttcaaaatccatgaatcaccaaccacaccaacaaggtctccatcaatgcttgtatacttgaaatcatcaagaacagtta---catcactgtcacttt |
180 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||||||||| || ||||||| ||| ||||||| ||||||| ||||||||| | ||| | ||| ||||| |
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|
| T |
4046578 |
gttttcaaattccatgaatttccaacaacaccaacaagatcaccatcaacacttttatacttaaaatcattaagaacagtaacaccatgattgttacttt |
4046677 |
T |
|
| Q |
181 |
ttgacagaagttgaagatgaagagggtgtgcta |
213 |
Q |
| |
|
|||| | ||| | || ||||||||||||||||| |
|
|
| T |
4046678 |
ttgataaaagcttaacatgaagagggtgtgcta |
4046710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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