View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11945_high_15 (Length: 222)
Name: NF11945_high_15
Description: NF11945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11945_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 14985177 - 14985330
Alignment:
| Q |
12 |
agaagcaaagggagttaggtgggctttacaatatgcaacagctcaaggtatccaaagtgtggaagtaattagtgatgcactgggagtagtcaactgtgtc |
111 |
Q |
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| T |
14985177 |
agaagcaatgggagttaggtgggccttataatatgcaacagctcaaggtatccaaagtgtggaagtaaatagtgatgcactgggagtagtcaattgtgtc |
14985276 |
T |
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| Q |
112 |
aacaagaacagtgttgtgctatctattgaacctgtagtttatgattgttggaaa |
165 |
Q |
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| T |
14985277 |
aacaagaacagtgttgtgatatctattgaacctgtagtttatgattgttggaaa |
14985330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 14985782 - 14985825
Alignment:
| Q |
156 |
ttgttggaaattattagaaaaaatcccatttgtaacggttaaac |
199 |
Q |
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| T |
14985782 |
ttgttggaaattattagaaaaaatcccatttgtaacggttaaac |
14985825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 199
Target Start/End: Original strand, 5618905 - 5619049
Alignment:
| Q |
55 |
caaggtatccaaagtgtggaagtaattagtgatgcactgggagtagtcaactgtgtcaacaagaacagtgttgtgctatctattgaacctgtagtttatg |
154 |
Q |
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| T |
5618905 |
caaggaatccaaagtgtgaaagtggtcagtgatgcgctggcagtagttaactgtgtcaacaagaacactgttgtcgtgtccattcagcctatagtgtctg |
5619004 |
T |
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| Q |
155 |
attgttggaaattattagaaaaaatcccatttgtaacggttaaac |
199 |
Q |
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| T |
5619005 |
attgttggaaattattacagaaaattccatttgtaatggttaaac |
5619049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 31700303 - 31700347
Alignment:
| Q |
153 |
tgattgttggaaattattagaaaaaatcccatttgtaacggttaa |
197 |
Q |
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| T |
31700303 |
tgattgttggaatttaatagaacaaatcccatttgtaatggttaa |
31700347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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