View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11945_high_3 (Length: 616)
Name: NF11945_high_3
Description: NF11945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11945_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Original strand, 36575262 - 36575869
Alignment:
| Q |
1 |
gggttgcaaaacagcggtggctatggtgagtgaggatggagacggcggtggcggtgggtggtgagagaaagaaggaagaggtaggtggaaggggatagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36575262 |
gggttgcaaaacagcggtggctatggtgagtgaggatggagacggcggtggcggtgggtggtgagagaaagaaggaagaggtaggtggaaggggaaagat |
36575361 |
T |
|
| Q |
101 |
gacgatgacgtgaatgtgttatgtttttagaaaatcagaaaaacaaacagggaagtaattgggtaattgataagcaaattgtacttaatttcttcaattt |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36575362 |
gacg------tgaatgtgttatgtttttagaaaatcagaaaaacaaacagggaagtaattgggtaattgataagcaaattgtacttaatttcttcaattt |
36575455 |
T |
|
| Q |
201 |
aacagtacaattgaaa-------------------aatggaatgctaatacatgaatttggcagagccaattgaagaatgaaggtacaaatatactaaga |
281 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36575456 |
aacagtacaattgaaatttaacagtacaattgaaaaatggaatgctaatacatgaatttggcagagccaattgaagaatgaaggtacaaatagactaaga |
36575555 |
T |
|
| Q |
282 |
agaaaacactaagctcnnnnnnnnnnnnnnnnncttgattttcatccaaaatattccacacctatcattgtcaatcaatggcctattcaccaaagtctgt |
381 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
36575556 |
agaaaacactaagctcagagagagaaagaga--cttgattttcatccaaaatattccacacctatcattgtcaatcagtggcctatttaccaaagtctgt |
36575653 |
T |
|
| Q |
382 |
ggtgaacttctgttggtaatttttactctcattccacgtcgtggttccctgatgctagtatctggagccatatgtccgttcccttcacgtggttgtgctt |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
36575654 |
ggtgaacttctgttggtaatttttactctcattccacgtcgtggttccctgatgctaggatctggagccatctgtccgttccctttacgtggttgtgctt |
36575753 |
T |
|
| Q |
482 |
tcattttgttatgactacttacagaatgtttcactgaaagaaagaaggaagaggtaggttgtagtggttgcaaacgatggtggcgacggtggatgtgggt |
581 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||||| |
|
|
| T |
36575754 |
tcattttgtcctaactacttacagaatgtttcactgaaagaaagaaggaagaggtaggttgtagtggttgcaaacaacggtggcaacggtggaggtgggt |
36575853 |
T |
|
| Q |
582 |
ggtcaccggtcggtgg |
597 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36575854 |
ggtcaccggtcggtgg |
36575869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 509 - 591
Target Start/End: Original strand, 35836128 - 35836210
Alignment:
| Q |
509 |
gtttcactgaaagaaagaaggaagaggtaggttgtagtggttgcaaacgatggtggcgacggtggatgtgggtggtcaccggt |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||||||||| |||||||||| ||||| |
|
|
| T |
35836128 |
gtttcactgaaagaaagaaggaagaggtagttcgtagtggttgcaaagtacggtggcgacggtggaggtgggtggtcgccggt |
35836210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 35836011 - 35836128
Alignment:
| Q |
1 |
gggttgcaaaacagcggtggctatggtgagtgaggatggagacggcggtggcggtg--------------ggtggtgagagaaagaaggaagaggtaggt |
86 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
35836011 |
gggttgcaaaacagcggcggttatggtgagtgaggatgaagacggcggtggctgtgagagaaagaatgtgggtggtgagagaaagaaggaagaggtaggt |
35836110 |
T |
|
| Q |
87 |
ggaaggggatagatgacg |
104 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
35836111 |
ggaagggggaagatgacg |
35836128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 4 - 597
Target Start/End: Original strand, 1045461 - 1046064
Alignment:
| Q |
4 |
ttgcaaaacagcggtggctatggtgagtgaggatggagacggcggtggcggtgggtggtgagagaaagaaggaagaggtaggtggaaggggatagatgac |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1045461 |
ttgcaaaacaacggtggctatggtgagtgaggatggacacggcggtggcggtgggtggtaagagaaagaaggaagaggtaggtggaaggggaaagatgac |
1045560 |
T |
|
| Q |
104 |
gatgacgtgaatgtgttatgtttttagaaaatcagaaaaacaaacagggaagtaattgggtaattgataagcaaattgtacttaatttcttcaatttaac |
203 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1045561 |
g------tgaatgtgttatgtttt-agaaaatcagaaaaacaaacagggaagtaattgggtaattgataagcaaattgtacttaatttcttcaatttaac |
1045653 |
T |
|
| Q |
204 |
agtacaattgaaa-------------------aatggaatgctaatacatgaatttggcagagccaattgaagaatgaaggtacaaatatactaagaaga |
284 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1045654 |
agtacaattgaaatttaacagtacaattgaaaaatggaatgctaatacatgaatttggcagagccaattgaagaatgaaggtacaaatagactaagaaga |
1045753 |
T |
|
| Q |
285 |
aaacactaagctcnnnnnnnnnnnnnnnnncttgattttcatccaaaatattccacacctatcattgtcaatcaatggcctattcaccaaagtctgtggt |
384 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
1045754 |
aaacactaagctcagagagataaagaga--cttgattttcatccaaaatattccacacctatcattgtcaatcagtggcctatttaccaaagtctgtggt |
1045851 |
T |
|
| Q |
385 |
gaacttctgttggtaatttttactctcattccacgtcgtggttccctgatgctagtatctggagccatatgtccgttcccttcacgtggttgtgctttca |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1045852 |
gaacttctgttggtaatttttactctcattccacgtcgtggttccctgatgctaggatctggagccatctgtccgttcccttcacgtggttgtgctttca |
1045951 |
T |
|
| Q |
485 |
ttttgttatgactacttacagaatgtttcactgaaagaaagaaggaagaggtaggttgtagtggttgcaaacgatggtggcgacggtggatgtgggtggt |
584 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
1045952 |
ttttgttctgactacttacagaatgtttcactgaaagaaagaaggaagaggtaggttgtagtggttgcaaacgacggtggcgacggtggaggtgggtggt |
1046051 |
T |
|
| Q |
585 |
caccggtcggtgg |
597 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1046052 |
caccggtcggtgg |
1046064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University