View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11945_high_5 (Length: 386)
Name: NF11945_high_5
Description: NF11945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11945_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 8929096 - 8929443
Alignment:
| Q |
18 |
cacagagaaacagaattcaatttacaaataaacaatcagaaacaaattcacaagatgaaagtggatctgaattctgaagtcagaactcacagagttcgta |
117 |
Q |
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| T |
8929096 |
cacagagaaacagaattcaatttacaaataaacaatcagaaacaaattcacaagatgaaagtggatctgaattctgaagtcagaactcacagagttcgta |
8929195 |
T |
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| Q |
118 |
gtatttgtgaggagaaagcttggaagtacgaagttcagaaagcatctgagcagaatatttcaaagcatctctgagattattcgaatcctgaaaacgaatc |
217 |
Q |
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| T |
8929196 |
gtatttgtgaggagaaagcttggaagtacgaagttcagaaagcatctgagcagaatatttcaaagcatctctgagattattcgaatcctgaaaacgaatc |
8929295 |
T |
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| Q |
218 |
ggaaaatgaaatcggatccaaatcgattgaaattcaaaggcgaatctgtaattacgataatcgtgaatcgcgagtggaattgaagaagagagaaaacggt |
317 |
Q |
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| T |
8929296 |
ggaaaatgaaatcggatccaaatcaattgaaattcaaaggcgaatctgtaattacgataatcgtgaatcgcgagtggaattgaagaagagagaaaacggt |
8929395 |
T |
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| Q |
318 |
tagggtttaacggaggagttaccaatgcacggtgcatgtagaaggagt |
365 |
Q |
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| T |
8929396 |
tagggtttaacggaggagttaccaatgcacggtgcatgtagaaggagt |
8929443 |
T |
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