View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11945_high_6 (Length: 371)
Name: NF11945_high_6
Description: NF11945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11945_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 32708019 - 32708356
Alignment:
| Q |
16 |
atagcaaaccattgataaatgtagttccctcctgtagaaattcatgctgccagggtttgtcttaaaaaatgtccaagaaatattccgaataattgaatat |
115 |
Q |
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| T |
32708019 |
atagcaaaccattgataaatgtagtcccctcctgtagaaattcatgcttccagggtttgtcttaaaaaatgtccaagaaatattccgaataattgaatat |
32708118 |
T |
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| Q |
116 |
atgatctgtatcatccttcaaccaggctattaaataagtgtctctttaggagcaataaaattaaccatttgcatacaaatcattctagtactcaaattca |
215 |
Q |
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| T |
32708119 |
atgatctgtatcatccttcaaccaggctattaaataagtgtctctttaggtgcaataaaattaaccatttgcatacaaatcattctagtactcaaattca |
32708218 |
T |
|
| Q |
216 |
gaaaatactgcattaagcttaaaagttaactaaagctgtagtgcagaataattgtctgggactgagagttagagaaggtggtgtgatgcctacaggagga |
315 |
Q |
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| T |
32708219 |
gaaaatactgcattaagcttaaaagttaactaaagctgtagtgcagaataattgcctgggactgagagttagagaaggtggtgtgatgcctacaggagga |
32708318 |
T |
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| Q |
316 |
ataaaaggatggttatgagagtgatatgatgaccagag |
353 |
Q |
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| T |
32708319 |
ataaaaggatggttatgagagtgatatgatgaccagag |
32708356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 28 - 244
Target Start/End: Original strand, 16892983 - 16893218
Alignment:
| Q |
28 |
tgataaatgtagttccctcctgtagaaattcatgctgccagggtttgtcttaaaaaatgtccaagaaatattccgaataattgaatatatgatctgtatc |
127 |
Q |
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| T |
16892983 |
tgataaatgtagtcccctcctgaagaaattcatgcttccagggttcgtcttcaaaaatgtccaaaaaatattctgaataattgaatatatcatctgtatt |
16893082 |
T |
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| Q |
128 |
atccttcaaccaggctattaaataagtgtctctttaggagcaataaaattaaccatt-------------------tgcatacaaatcattctagtactc |
208 |
Q |
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| T |
16893083 |
atcctgcaaccagactattaaatcagtgtctctttaggcgcaacaaaattaaccattttcataccaagatcagtcgtgcatacaaatcattctagtactc |
16893182 |
T |
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| Q |
209 |
aaattcagaaaatactgcattaagcttaaaagttaa |
244 |
Q |
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| T |
16893183 |
aaattcagaaaatgctgcattaagcttagaagttaa |
16893218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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