View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11945_high_9 (Length: 298)
Name: NF11945_high_9
Description: NF11945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11945_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 47100706 - 47100976
Alignment:
| Q |
19 |
agaaatgatggaaacccacccattacatgtagacttatagtctacaaacttannnnnnnctcccaaataatgaccttgataaaagagagattaaattaat |
118 |
Q |
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| T |
47100706 |
agaaatgatggaaacccacccattacatgtagacttatagtctacaaacttatttttttctcccaaataatgaacttgataaaagagagattaaattaat |
47100805 |
T |
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| Q |
119 |
taacacgtgaatactatatattatagagatcaataagtaacgactattttaaagaaaaaagctgttatcaatatcatccccttgcttaatattgttaatt |
218 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47100806 |
taacacgtgaatactatataatatagagatcaataagtaacgactattttaaagaaaaaagctgttatcaatatcatccccttgcttaatattgttaatt |
47100905 |
T |
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| Q |
219 |
gatgggctaggacagttcttgtcattaagaagttcctctatcatttgaagtgcaattctatcttcttcatc |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47100906 |
gatgggctaggacagttcttgtcattaagaagttcctctatcatttgaagtgcaattctatcttcttcatc |
47100976 |
T |
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