View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11945_low_1 (Length: 1102)
Name: NF11945_low_1
Description: NF11945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11945_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 550 - 1087
Target Start/End: Complemental strand, 46795116 - 46794579
Alignment:
| Q |
550 |
gacttgttacaagatgtgtagcagtggaagaatgcaacaagaagaaattaggtaccctgggcctggtgcagattcaacaaatactcaacaaatgctgcaa |
649 |
Q |
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| T |
46795116 |
gacttgttacaagatgtgtagcagtggaagaatgcaacaagaagaaattaggtaccctgggcctggtgcagattcaacaaatactcaacaaatgctgcaa |
46795017 |
T |
|
| Q |
650 |
caattgatgtcatcttcaacatcacctgctgatagtactgaaactgaggcttatgcaagatggcgtcagcttcttcaacttcagacctatagtaaccctt |
749 |
Q |
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| T |
46795016 |
caattgatttcatcttcaacatcacctgttgatagtactgaaactgaggcttatgcaagatggcgtcagcttcttcaacttcagacctatagtaaccctt |
46794917 |
T |
|
| Q |
750 |
cttttcataatcatcataacctattggatagtgaaatacctagagatcatggtggatttaatgtgattgaggaatccattatgattaaaaggaacatgat |
849 |
Q |
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| T |
46794916 |
cttttcataatcatcataacctattggatagtgaaatacctagagatcatggtggatttaatgtgattgaggaatccattatgattaaaaggaacatgat |
46794817 |
T |
|
| Q |
850 |
gtctgctacttcttctcaatatcatcaacaaaacctaattcctactatccctaaggaattaccaagtttcaaccacaatattaatgattactccttattc |
949 |
Q |
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| T |
46794816 |
gtctgctacttcttctcaatatcatcaccaaaacctaattcctactatccctaaggaattaccaagtttcaaccacaatattaatgattactccttattc |
46794717 |
T |
|
| Q |
950 |
ccttgttcaactccaaattgggagactagctccaacttttgtggaatagccactatgaatctatctacatgcttcttgaatccgtggtaagtaattaact |
1049 |
Q |
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| T |
46794716 |
ccttgttcaactccaaattgggagactagctccaacttttgtggaatagccactatgaatctatctacatgcttcttgaatccgtggtaagtaattaact |
46794617 |
T |
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| Q |
1050 |
aagtgaatgtttgatatcacaacgagcttgaaagaatt |
1087 |
Q |
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| T |
46794616 |
aagtgaatgtctgatatcatagcgaccttgaaagaatt |
46794579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 11 - 491
Target Start/End: Complemental strand, 46795667 - 46795175
Alignment:
| Q |
11 |
acatcaacacatcatgatgttgttccattccctgatgctaattttgcagattgtaacaacactgcaatgtttgaacaagataatggctacaactttggtg |
110 |
Q |
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| T |
46795667 |
acatcaacacatcatgatgttgttccattccctgatactaattttgcagattgtaacaacactgcaatgtttgaacaagataatggctacaactttggtg |
46795568 |
T |
|
| Q |
111 |
ttactagtagttttccaattccaaattttgttgtgacagagcagaaacaaccagcaacagttataggaggaaagaaagataggcacagtaagattcacac |
210 |
Q |
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| T |
46795567 |
ttactagtagttttccaattccaaattttgttgtgacagagcagaaacaaccagcaacagttataggaggaaagaaagataggcacagtaagattcacac |
46795468 |
T |
|
| Q |
211 |
atcacagggtttgagagacagaagggtaagattgtcaagtgaaatagcaagaaagttctttgatcttcaagatatgttagagtttgacaaaccaagtaac |
310 |
Q |
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| T |
46795467 |
atcacagggtttgagagacagaagggtaagattgtcaagtgaaatagcaagaaagttctttgatcttcaagatatgttagagtttgacaaaccaagtaac |
46795368 |
T |
|
| Q |
311 |
acacttgagtggcttttcactaaatctgacactgcaatcaaagaactagctagaactaaaaacgctgcttgttacaacaac------------aacagcc |
398 |
Q |
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| T |
46795367 |
acacttgagtggcttttcactaaatctgacactgcaatcaaagaactagctagaactaaaaacgctgcttgttacaacaacaacaacaacgacaacagcc |
46795268 |
T |
|
| Q |
399 |
cattttttgattcaaatagcaacaaatcatgttccggcggtggtggcggtgatggtagttgttcttctaaagggagaaaattgagatggacac |
491 |
Q |
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| T |
46795267 |
cattttttgattcaaatagcaacaaatcattttccggcggtggtggcggtgatggtagttgttcttctaaagggagaaaattgaaatggacac |
46795175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 182 - 336
Target Start/End: Original strand, 6032037 - 6032191
Alignment:
| Q |
182 |
aagaaagataggcacagtaagattcacacatcacagggtttgagagacagaagggtaagattgtcaagtgaaatagcaagaaagttctttgatcttcaag |
281 |
Q |
| |
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|||||||| ||||| || |||||||||||||| || || ||||||||||||||||| ||| | || | || || || || |||||||| |||||||||| |
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| T |
6032037 |
aagaaagacaggcatagcaagattcacacatctcaagggttgagagacagaagggtgagactttccatcgagatcgcgaggaagttcttcgatcttcaag |
6032136 |
T |
|
| Q |
282 |
atatgttagagtttgacaaaccaagtaacacacttgagtggcttttcactaaatc |
336 |
Q |
| |
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| ||||||| |||||||||| |||| ||||||||||| ||||| |||| |||||| |
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| T |
6032137 |
acatgttagggtttgacaaagcaagcaacacacttgaatggctcttcaataaatc |
6032191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 6711250 - 6711326
Alignment:
| Q |
261 |
gaaagttctttgatcttcaagatatgttagagtttgacaaaccaagtaacacacttgagtggcttttcactaaatct |
337 |
Q |
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|||||||||| ||||||||||| ||||||| |||||||||| | || ||||||||||| ||||||||||| |||||| |
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| T |
6711250 |
gaaagttcttcgatcttcaagacatgttagggtttgacaaagctagcaacacacttgattggcttttcacaaaatct |
6711326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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