View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11945_low_10 (Length: 247)
Name: NF11945_low_10
Description: NF11945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11945_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 1898928 - 1898712
Alignment:
| Q |
1 |
cccaaattgtcgacataataactatactccgataaatccaaatcctccatacaaaatctagtgtgcatgtttgctcttcccaccccctcagaatttgata |
100 |
Q |
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| T |
1898928 |
cccaaattgtcgacataataactatactccgataaatccaaatcctccatacaaaatctagtgtgcatgtttgctcttcccaccccctcagaatttgata |
1898829 |
T |
|
| Q |
101 |
cagcaagcaataagtgagaattagttaaattctcacattgggctggttctgatggtaaagcaggcccatgtaccaccgagagaggacccttaaaacctac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1898828 |
cagcaagcaataagtgagaattagttaaattctcacattgggctggttctgatagtaaagcaggcccatgtaccaccaagagaggacccttaaaacctac |
1898729 |
T |
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| Q |
201 |
tgaccgccttcgccttc |
217 |
Q |
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||||||||||||||||| |
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| T |
1898728 |
tgaccgccttcgccttc |
1898712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 1908374 - 1908158
Alignment:
| Q |
1 |
cccaaattgtcgacataataactatactccgataaatccaaatcctccatacaaaatctagtgtgcatgtttgctcttcccaccccctcagaatttgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1908374 |
cccaaattgtcgacataataactatactccgataaatccaaatcctccatacaaaatctagtgtgcatgtttgctcttcccaccccctcagaatttgata |
1908275 |
T |
|
| Q |
101 |
cagcaagcaataagtgagaattagttaaattctcacattgggctggttctgatggtaaagcaggcccatgtaccaccgagagaggacccttaaaacctac |
200 |
Q |
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| T |
1908274 |
cagcaagcaataagtgagaattagttaaattctcacattgggctggttctgatagtaaagcaggcccatgtaccaccaagagaggacccttaaaacctac |
1908175 |
T |
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| Q |
201 |
tgaccgccttcgccttc |
217 |
Q |
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| T |
1908174 |
tgaccgccttcgccttc |
1908158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 1892234 - 1892115
Alignment:
| Q |
74 |
ctcttcccaccccctcagaatttgatacagcaagcaataagtgagaattagtt----aaattctcacattgggctggttctgatggtaaagcaggcccat |
169 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
1892234 |
ctcttcccaccccttcagaatttgatacagcaagcaataactgagaattagttaaaaaaattctcatattggtctggttctgatggtaaagcaggcccat |
1892135 |
T |
|
| Q |
170 |
gtaccaccgagagaggaccc |
189 |
Q |
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| T |
1892134 |
ttaccaacaaaagaggaccc |
1892115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 189
Target Start/End: Original strand, 2936338 - 2936457
Alignment:
| Q |
74 |
ctcttcccaccccctcagaatttgatacagcaagcaataagtgagaattagtt----aaattctcacattgggctggttctgatggtaaagcaggcccat |
169 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
2936338 |
ctcttcccaccccttcagaatttgatacagcaagcaataactgagaattagttaaaaaaattctcatattggtctggttctgatggtaaagcaggcccat |
2936437 |
T |
|
| Q |
170 |
gtaccaccgagagaggaccc |
189 |
Q |
| |
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||||| | | ||||||||| |
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|
| T |
2936438 |
ttaccaacaaaagaggaccc |
2936457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 2930773 - 2930863
Alignment:
| Q |
21 |
actatactccgataaatccaaatcctccatacaaaatctagtgtgcatgtttgctcttcccaccccctcagaatttgatacagcaagcaat |
111 |
Q |
| |
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||||||||||||||||||| |||| |||||| |||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2930773 |
actatactccgataaatccgaatcgtccatagtaaatctagggtgcctgtttgctcttttcaccccctcagaatttgatacagcaagcaat |
2930863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 2930861 - 2930908
Alignment:
| Q |
128 |
aattctcacattgggctggttctgatggtaaagcaggcccatgtacca |
175 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2930861 |
aattctcacattgggctggttctaatggtaaagcaggcccatgtacca |
2930908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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