View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11945_low_12 (Length: 238)
Name: NF11945_low_12
Description: NF11945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11945_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29875383 - 29875160
Alignment:
| Q |
1 |
catgtttgatgacataagtatttttggacgtatcatctcattgttaa-tgatccataaacattttttaataaaattggcagaaaaaatgggcgatgatat |
99 |
Q |
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| T |
29875383 |
catgtttgatgacataagtatttttggacgtatcacctcattgttaaatgatccataaacattttttaataaaattggcagaaaaaatgggcgatgatat |
29875284 |
T |
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| Q |
100 |
aaatattctatgacttaaaagaccagtttataacaaaaggatcgaggaatatataaaaactttttatagacatctaacttaaagaatcgcataagacatt |
199 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
29875283 |
aaatattctatgacttaaaaaaccagtttacaacaaaaggatcgaggaatatataaaaactttttatagatatctaacttaaagaatcacataagacatc |
29875184 |
T |
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| Q |
200 |
tgacctaaattttaatggtgagat |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
29875183 |
tgacctaaattttaatggtgagat |
29875160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 35341887 - 35341973
Alignment:
| Q |
1 |
catgtttgatgacataagtatttttggacgtatcatctcattgttaa-tgatccataaacattttttaataaaattggcagaaaaaa |
86 |
Q |
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||||||||||| |||||| |||||| ||| ||||| || ||||||| ||||||||||| ||||||||| || |||| |||||||| |
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| T |
35341887 |
catgtttgatgtcataagcatttttagacctatcaccttcttgttaaatgatccataaatattttttaaagaagttggaagaaaaaa |
35341973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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