View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11945_low_13 (Length: 237)
Name: NF11945_low_13
Description: NF11945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11945_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 29691460 - 29691258
Alignment:
| Q |
17 |
cagagaatacctcaaaatatggtgggatgttatcgagataagaatgaaaatatgcttgagttaaaaaa-gtagtaaaaagataacaatagacaaagatta |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29691460 |
cagagaatacctcaaaatatggtgcgatgttatcgagataagaatgaaaatatgcttgagttaaaaaaagtagtaaaaagataacaatagacaaagatta |
29691361 |
T |
|
| Q |
116 |
tttaggaagaacaaaattattttatattgatattataatacaacgtatgtataatttgagacagaatccgtaaaaactataataactgctatagggtcac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29691360 |
tttaggaagaacaaaattattttatattgatattataatacaacgtatgtataatttgagacagaatccgtaaaaactaaaataactgctatagggtcac |
29691261 |
T |
|
| Q |
216 |
cgc |
218 |
Q |
| |
|
||| |
|
|
| T |
29691260 |
cgc |
29691258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University