View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11945_low_14 (Length: 229)
Name: NF11945_low_14
Description: NF11945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11945_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 49159390 - 49159494
Alignment:
| Q |
1 |
aatcaaacaataacacacccaaatggcacgcacaatactactaattatttttcaaacggtaccttaaaccaccttcaatggtgaacactatccattgtta |
100 |
Q |
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| T |
49159390 |
aatcaaacaataacacacccaaatggcacgcacaatactactaattatttttcaaacggtaccttaaaccaccttcaacggtgaacactatccattgtta |
49159489 |
T |
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| Q |
101 |
ttttg |
105 |
Q |
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||||| |
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| T |
49159490 |
ttttg |
49159494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 49159548 - 49159648
Alignment:
| Q |
112 |
atattgtgccaaattatcttgaaacaactcttctattttttactccaatgatgatctataaaatactcatattgagtcccacaaatttacctcacatcaa |
211 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49159548 |
atattgtgtcaaatcatcttgaaacaactcttctattttttattccaatgatgatctataaaatactcatattgagtcccacaaatttacctcacatcaa |
49159647 |
T |
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| Q |
212 |
t |
212 |
Q |
| |
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| |
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| T |
49159648 |
t |
49159648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 201
Target Start/End: Original strand, 5335022 - 5335153
Alignment:
| Q |
70 |
caccttcaatggtgaacactatccattgttattttgaaggtcatattgtgccaaattatcttgaaacaactcttctattttttactccaatgatgatcta |
169 |
Q |
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||||| ||||||||||| | || ||||||||||||| ||| |||||||||||| ||||| || ||||| ||||||||| ||||||||| ||||||| |
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| T |
5335022 |
cacctccaatggtgaactccattcattgttattttgtgggttccattgtgccaaatcatcttaaagtaactcctctatttttcactccaatggtgatcta |
5335121 |
T |
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| Q |
170 |
taaaatactcatattgagtcccacaaatttac |
201 |
Q |
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| T |
5335122 |
taaaatactcatgttaggtcccacaaatttac |
5335153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 45737111 - 45737156
Alignment:
| Q |
162 |
atgatctataaaatactcatattgagtcccacaaatttacctcaca |
207 |
Q |
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||||||||||||||| | ||||||||||||| |||||||||||||| |
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| T |
45737111 |
atgatctataaaataattatattgagtcccataaatttacctcaca |
45737156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 34374601 - 34374735
Alignment:
| Q |
73 |
cttcaatggtgaacactatccattgttattttgaaggtcatattgtgccaaattatcttgaaacaactcttctattttttactccaatgatgatctataa |
172 |
Q |
| |
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|||||||||||||| ||| ||| |||||||||| ||||||||||| |||||| |||||||| || ||| | |||| |||||||||||| |||||| ||| |
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| T |
34374601 |
cttcaatggtgaactctacccactgttattttgtgggtcatattgtaccaaatcatcttgaagcatctcctatattatttactccaatggtgatctttaa |
34374700 |
T |
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| Q |
173 |
aatactcatattgagtcccacaaatttacctcaca |
207 |
Q |
| |
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| |||||||||| || |||||||||||||||||| |
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| T |
34374701 |
attactcatatttggttccacaaatttacctcaca |
34374735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 7664425 - 7664511
Alignment:
| Q |
95 |
ttgttattttgaaggtcatattgtgccaaattatcttgaaacaactcttctattttttactccaatgatgatctataaaatactcat |
181 |
Q |
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||||||||||| |||| |||||| |||||| |||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||| |
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| T |
7664425 |
ttgttattttgtgggtcttattgtaccaaataatcttgaagcaactcctctattttttacttcaatggtgatctataaaatactcat |
7664511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 17434370 - 17434298
Alignment:
| Q |
112 |
atattgtgccaaattatcttgaaacaactcttctattttttactccaatgatgatctataaaatactcatatt |
184 |
Q |
| |
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||||| |||||||| ||||||||| ||||| | ||||||||||||||||||| || ||||| ||||||||| |
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| T |
17434370 |
atattatgccaaatcatcttgaaataactcatgcgttttttactccaatgatgaactctaaaaaactcatatt |
17434298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 3311357 - 3311219
Alignment:
| Q |
70 |
caccttcaatggtgaacactatccattgttattttgaaggtcatattgtgccaaattatcttgaaacaactcttctattttttactccaatgatgatcta |
169 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||| || | |||| ||||| || |||||| ||| |||| || |||||||||| ||||| | | || |
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| T |
3311357 |
caccttcaatggtgaactctatccatgattattttgagggccctattatgccacataatcttgtaactactcatcaattttttacttcaatggtaaactt |
3311258 |
T |
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| Q |
170 |
taaaatactcatattgagtcccacaaatttacctcacat |
208 |
Q |
| |
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|||||||||||| ||| ||||||||| |||||| ||||| |
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| T |
3311257 |
taaaatactcatcttgggtcccacaattttaccacacat |
3311219 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 26454077 - 26454009
Alignment:
| Q |
133 |
aaacaactcttctattttttactccaatgatgatctataaaatactcatattgagtcccacaaatttac |
201 |
Q |
| |
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||||||||| | ||||||||||||||||| ||| || |||| ||||||||| ||||||||| ||||| |
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| T |
26454077 |
aaacaactcatttattttttactccaatggtgaactctaaacaactcatattaggtcccacaactttac |
26454009 |
T |
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