View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11945_low_18 (Length: 202)
Name: NF11945_low_18
Description: NF11945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11945_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 3 - 162
Target Start/End: Original strand, 2911592 - 2911753
Alignment:
| Q |
3 |
cagagaccaaagtgactatttgctcatc--gttaccaaaattttttatatccataatctgccacgtcacaaatattataaaaacaataagctgtatacgt |
100 |
Q |
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| T |
2911592 |
cagagaccaaagtgactatttgctcatcatgttaccaaatttttttatatccataatctgccacgtcacaaatattataaaaacaataagctgtatacgt |
2911691 |
T |
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| Q |
101 |
actcaatggataatagagtacaaagtggtatacatatacatctacgtgggtgatcatatatc |
162 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
2911692 |
actcaatggataatagagtacaaagtggtatgcatatacatctacgtgggtcatcatatatc |
2911753 |
T |
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