View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11945_low_2 (Length: 732)

Name: NF11945_low_2
Description: NF11945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11945_low_2
NF11945_low_2
[»] chr1 (61 HSPs)
chr1 (520-724)||(2509403-2509607)
chr1 (15-175)||(2508862-2509022)
chr1 (236-352)||(34062208-34062324)
chr1 (231-349)||(48993943-48994070)
chr1 (392-501)||(2509306-2509415)
chr1 (236-349)||(8337877-8337990)
chr1 (235-349)||(5995358-5995481)
chr1 (237-352)||(46333969-46334084)
chr1 (236-349)||(29179623-29179745)
chr1 (236-349)||(49444939-49445050)
chr1 (245-349)||(29371376-29371480)
chr1 (236-358)||(44706800-44706932)
chr1 (245-352)||(38674528-38674633)
chr1 (243-349)||(15220817-15220923)
chr1 (236-349)||(48498405-48498527)
chr1 (260-349)||(741528-741617)
chr1 (236-352)||(37155036-37155161)
chr1 (264-348)||(17127591-17127675)
chr1 (168-235)||(2509217-2509284)
chr1 (242-349)||(33219578-33219685)
chr1 (243-352)||(9157307-9157425)
chr1 (263-349)||(32540774-32540860)
chr1 (291-352)||(1819512-1819573)
chr1 (263-352)||(4609022-4609111)
chr1 (243-337)||(1091582-1091685)
chr1 (258-349)||(48604973-48605064)
chr1 (243-349)||(47303401-47303507)
chr1 (242-299)||(4609072-4609129)
chr1 (242-325)||(36290457-36290549)
chr1 (236-299)||(38674504-38674567)
chr1 (287-346)||(45728337-45728396)
chr1 (260-322)||(5694942-5695004)
chr1 (295-349)||(28928805-28928859)
chr1 (243-297)||(48823891-48823945)
chr1 (243-299)||(46333952-46334008)
chr1 (235-274)||(46931986-46932025)
chr1 (250-299)||(1819502-1819551)
chr1 (304-352)||(19711203-19711251)
chr1 (243-299)||(28928785-28928841)
chr1 (242-298)||(32157602-32157658)
chr1 (313-349)||(48993993-48994029)
chr1 (313-352)||(8337927-8337966)
chr1 (313-352)||(49444987-49445026)
chr1 (263-313)||(21630068-21630118)
chr1 (249-299)||(47303471-47303521)
chr1 (243-299)||(37155122-37155179)
chr1 (240-284)||(7788259-7788303)
chr1 (313-349)||(21630068-21630104)
chr1 (313-349)||(28395663-28395699)
chr1 (313-349)||(29179673-29179709)
chr1 (316-352)||(34062232-34062268)
chr1 (313-352)||(46334022-46334061)
chr1 (243-274)||(48993914-48993945)
chr1 (243-274)||(49444910-49444941)
chr1 (243-297)||(9157388-9157442)
chr1 (245-299)||(34062285-34062339)
chr1 (319-349)||(46932064-46932094)
chr1 (243-280)||(5694896-5694933)
chr1 (245-274)||(15220921-15220950)
chr1 (263-308)||(28395663-28395708)
chr1 (315-352)||(48823908-48823945)
[»] chr4 (48 HSPs)
chr4 (236-349)||(42375009-42375122)
chr4 (236-352)||(47404608-47404724)
chr4 (234-352)||(31430484-31430599)
chr4 (235-349)||(23444295-23444418)
chr4 (243-352)||(52028555-52028664)
chr4 (243-348)||(55090023-55090128)
chr4 (236-349)||(6271692-6271814)
chr4 (263-349)||(47661868-47661954)
chr4 (237-349)||(51265436-51265557)
chr4 (236-349)||(53954609-53954722)
chr4 (250-349)||(40789192-40789291)
chr4 (287-352)||(50384128-50384193)
chr4 (243-352)||(24006093-24006194)
chr4 (238-325)||(30861824-30861920)
chr4 (263-349)||(35682192-35682278)
chr4 (265-354)||(26186037-26186124)
chr4 (243-299)||(47404591-47404647)
chr4 (243-299)||(50384111-50384167)
chr4 (243-299)||(55090002-55090058)
chr4 (290-352)||(28693946-28694008)
chr4 (243-299)||(24006076-24006132)
chr4 (287-347)||(25818401-25818461)
chr4 (238-338)||(38714824-38714924)
chr4 (266-349)||(44379959-44380042)
chr4 (257-337)||(45591448-45591520)
chr4 (243-296)||(31430467-31430520)
chr4 (264-349)||(47762635-47762720)
chr4 (243-299)||(40789255-40789311)
chr4 (243-299)||(45591416-45591472)
chr4 (248-295)||(55089888-55089935)
chr4 (263-361)||(31532703-31532801)
chr4 (314-355)||(17285807-17285848)
chr4 (313-349)||(3862622-3862658)
chr4 (313-349)||(3871379-3871415)
chr4 (313-349)||(6271728-6271764)
chr4 (313-349)||(23444345-23444381)
chr4 (313-349)||(30861850-30861886)
chr4 (313-349)||(47661868-47661904)
chr4 (313-349)||(51265471-51265507)
chr4 (251-299)||(52028625-52028673)
chr4 (263-302)||(3862619-3862658)
chr4 (263-302)||(3871376-3871415)
chr4 (260-299)||(26186039-26186078)
chr4 (313-352)||(42375033-42375072)
chr4 (243-274)||(42375120-42375151)
chr4 (243-280)||(19184554-19184591)
chr4 (315-352)||(47404663-47404700)
chr4 (245-274)||(47661952-47661981)
[»] chr5 (32 HSPs)
chr5 (237-349)||(3899839-3899951)
chr5 (235-349)||(16971142-16971256)
chr5 (234-349)||(2953195-2953302)
chr5 (243-349)||(28818923-28819029)
chr5 (263-352)||(16439164-16439253)
chr5 (236-349)||(19655148-19655270)
chr5 (263-349)||(29699393-29699479)
chr5 (263-352)||(3180083-3180172)
chr5 (235-352)||(19598321-19598446)
chr5 (236-349)||(291087-291209)
chr5 (263-349)||(30117854-30117940)
chr5 (243-343)||(38134405-38134505)
chr5 (243-348)||(16802450-16802555)
chr5 (243-336)||(26662405-26662498)
chr5 (243-336)||(26934000-26934093)
chr5 (238-349)||(2093963-2094074)
chr5 (263-337)||(12913829-12913903)
chr5 (243-299)||(3180066-3180122)
chr5 (249-299)||(16439214-16439264)
chr5 (313-354)||(16971165-16971206)
chr5 (313-352)||(3899862-3899901)
chr5 (249-349)||(2356287-2356383)
chr5 (243-299)||(19598408-19598463)
chr5 (263-299)||(28818993-28819029)
chr5 (313-349)||(29699393-29699429)
chr5 (314-349)||(291123-291158)
chr5 (243-274)||(2953300-2953331)
chr5 (243-274)||(16971254-16971285)
chr5 (250-299)||(6912310-6912359)
chr5 (304-349)||(14167178-14167223)
chr5 (304-349)||(37325584-37325629)
chr5 (245-274)||(39777050-39777079)
[»] chr2 (29 HSPs)
chr2 (234-349)||(6217250-6217365)
chr2 (236-348)||(37961705-37961817)
chr2 (236-349)||(38933586-38933699)
chr2 (237-349)||(29925596-29925708)
chr2 (249-352)||(2828596-2828699)
chr2 (243-349)||(14229379-14229484)
chr2 (236-349)||(29508716-29508839)
chr2 (236-349)||(16514414-16514536)
chr2 (243-352)||(2893969-2894078)
chr2 (263-348)||(15011306-15011391)
chr2 (263-348)||(37762028-37762113)
chr2 (275-349)||(14470618-14470692)
chr2 (263-348)||(6721977-6722062)
chr2 (234-299)||(15011356-15011421)
chr2 (236-352)||(9173004-9173129)
chr2 (240-296)||(9172984-9173040)
chr2 (313-352)||(38933610-38933649)
chr2 (245-299)||(2894039-2894093)
chr2 (243-299)||(14464561-14464617)
chr2 (267-337)||(24115950-24116020)
chr2 (236-274)||(37632981-37633019)
chr2 (249-304)||(2143943-2143998)
chr2 (313-352)||(6217300-6217339)
chr2 (313-352)||(29925646-29925685)
chr2 (243-274)||(38933697-38933728)
chr2 (234-272)||(1992233-1992271)
chr2 (244-274)||(6217222-6217252)
chr2 (295-349)||(14892318-14892372)
chr2 (304-349)||(32545855-32545900)
[»] chr6 (17 HSPs)
chr6 (236-349)||(12343099-12343212)
chr6 (236-349)||(10521875-10521988)
chr6 (243-349)||(24618627-24618733)
chr6 (263-352)||(551188-551277)
chr6 (243-317)||(31654311-31654385)
chr6 (243-352)||(2315327-2315436)
chr6 (269-349)||(13043489-13043569)
chr6 (263-347)||(17750928-17751012)
chr6 (264-334)||(24587488-24587558)
chr6 (243-299)||(551171-551227)
chr6 (243-296)||(10521855-10521908)
chr6 (235-299)||(24975741-24975814)
chr6 (231-274)||(13043433-13043476)
chr6 (313-349)||(551241-551277)
chr6 (313-352)||(24618677-24618716)
chr6 (313-352)||(31654328-31654367)
chr6 (312-349)||(24975778-24975815)
[»] chr7 (34 HSPs)
chr7 (234-349)||(29053340-29053455)
chr7 (233-349)||(11016856-11016981)
chr7 (236-349)||(34854721-34854843)
chr7 (236-349)||(38975795-38975917)
chr7 (239-349)||(42628297-42628407)
chr7 (236-352)||(41018251-41018376)
chr7 (245-349)||(4649328-4649434)
chr7 (261-352)||(7671934-7672025)
chr7 (238-349)||(4290537-4290657)
chr7 (263-349)||(15027568-15027654)
chr7 (269-349)||(48000769-48000849)
chr7 (263-352)||(27028816-27028905)
chr7 (238-352)||(45231877-45231996)
chr7 (264-349)||(10419485-10419570)
chr7 (300-349)||(48000720-48000769)
chr7 (243-299)||(34854701-34854757)
chr7 (263-322)||(22764753-22764812)
chr7 (245-299)||(29053322-29053376)
chr7 (243-296)||(27028799-27028852)
chr7 (243-299)||(41018234-41018290)
chr7 (265-337)||(41945883-41945955)
chr7 (316-352)||(42628318-42628354)
chr7 (235-274)||(48000683-48000722)
chr7 (249-299)||(4649398-4649448)
chr7 (243-289)||(45231860-45231906)
chr7 (316-349)||(41018307-41018340)
chr7 (313-349)||(11016895-11016931)
chr7 (243-274)||(11016979-11017010)
chr7 (313-352)||(29053390-29053429)
chr7 (243-274)||(42628405-42628436)
chr7 (313-351)||(7671987-7672025)
chr7 (243-285)||(30165337-30165379)
chr7 (263-304)||(27028754-27028795)
chr7 (265-326)||(30217503-30217564)
[»] scaffold0047 (3 HSPs)
scaffold0047 (238-352)||(63758-63872)
scaffold0047 (247-299)||(63833-63885)
scaffold0047 (313-352)||(63780-63819)
[»] scaffold0016 (3 HSPs)
scaffold0016 (236-347)||(49731-49842)
scaffold0016 (313-349)||(49779-49815)
scaffold0016 (243-272)||(49700-49729)
[»] chr8 (33 HSPs)
chr8 (236-349)||(5033151-5033273)
chr8 (235-348)||(8243415-8243537)
chr8 (237-349)||(35440995-35441116)
chr8 (235-349)||(33841617-33841740)
chr8 (236-349)||(39850954-39851067)
chr8 (236-352)||(34541826-34541941)
chr8 (264-349)||(8796449-8796534)
chr8 (264-349)||(10086784-10086869)
chr8 (263-349)||(5667123-5667209)
chr8 (243-330)||(6296611-6296698)
chr8 (234-349)||(45191153-45191277)
chr8 (264-349)||(34229668-34229753)
chr8 (265-348)||(4958627-4958709)
chr8 (243-299)||(8243394-8243450)
chr8 (243-299)||(34541809-34541865)
chr8 (300-349)||(35031640-35031689)
chr8 (236-307)||(2581815-2581895)
chr8 (313-349)||(5033187-5033223)
chr8 (243-299)||(34229717-34229773)
chr8 (298-349)||(31159912-31159963)
chr8 (236-274)||(22649835-22649873)
chr8 (313-349)||(33841667-33841703)
chr8 (313-349)||(35441045-35441081)
chr8 (243-274)||(5033271-5033302)
chr8 (313-352)||(6296628-6296667)
chr8 (243-274)||(33841588-33841619)
chr8 (313-352)||(39850978-39851017)
chr8 (263-310)||(43844534-43844581)
chr8 (313-347)||(2581853-2581887)
chr8 (236-274)||(5667207-5667245)
chr8 (237-271)||(10086748-10086782)
chr8 (300-349)||(37618753-37618802)
chr8 (245-298)||(39139838-39139891)
[»] chr3 (33 HSPs)
chr3 (255-349)||(1801472-1801566)
chr3 (243-349)||(47677281-47677387)
chr3 (245-349)||(30476500-30476604)
chr3 (236-349)||(41752954-41753076)
chr3 (233-352)||(33689163-33689291)
chr3 (235-349)||(47492073-47492196)
chr3 (234-352)||(43139732-43139859)
chr3 (243-337)||(29031752-29031846)
chr3 (236-349)||(51046099-51046221)
chr3 (236-304)||(1801566-1801634)
chr3 (263-347)||(30734430-30734514)
chr3 (264-349)||(30580782-30580867)
chr3 (260-352)||(49418714-49418806)
chr3 (263-355)||(50550001-50550093)
chr3 (263-352)||(18321677-18321766)
chr3 (265-337)||(50524730-50524802)
chr3 (243-299)||(33689252-33689308)
chr3 (243-299)||(55223308-55223364)
chr3 (250-317)||(39385746-39385813)
chr3 (243-299)||(18321727-18321783)
chr3 (243-299)||(43139715-43139771)
chr3 (243-301)||(1272499-1272557)
chr3 (243-293)||(49414505-49414555)
chr3 (243-285)||(49418697-49418739)
chr3 (263-337)||(55223258-55223332)
chr3 (250-299)||(29031727-29031776)
chr3 (304-349)||(45103135-45103180)
chr3 (243-274)||(1272559-1272590)
chr3 (243-274)||(1801443-1801474)
chr3 (313-352)||(1801522-1801561)
chr3 (313-352)||(1801571-1801610)
chr3 (243-274)||(45103106-45103137)
chr3 (282-347)||(30904289-30904354)
[»] scaffold0161 (1 HSPs)
scaffold0161 (233-348)||(27247-27371)
[»] scaffold0586 (1 HSPs)
scaffold0586 (263-338)||(7084-7159)
[»] scaffold1033 (2 HSPs)
scaffold1033 (289-352)||(2265-2328)
scaffold1033 (243-299)||(2289-2345)
[»] scaffold1029 (2 HSPs)
scaffold1029 (289-352)||(2265-2328)
scaffold1029 (243-299)||(2289-2345)
[»] scaffold0481 (1 HSPs)
scaffold0481 (288-352)||(2910-2974)
[»] scaffold0180 (1 HSPs)
scaffold0180 (290-343)||(19154-19207)
[»] scaffold0536 (1 HSPs)
scaffold0536 (298-349)||(4918-4969)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 3e-90; HSPs: 61)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 520 - 724
Target Start/End: Original strand, 2509403 - 2509607
Alignment:
Q  520 tttatacttttaaaaataaaatgatctgtatatatattgcctcgactactataaatttattggaccatccccgcaaccaatgatagtttgatagtcaaca 619  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||  |||||||    
T  2509403 tttatacttttaaaaataaaatgatatgtatatatattgcctcgactactataaatttattagaccatccccgcaactaatgatagtttgacggtcaaca 2509502  T
Q  620 ctgcagatctcgagtcatgtgtgctccaaccaatttaatttgatcacttttataaatattttgatgttttatactatcaaccggaatgatgcgactttat 719  Q
     |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  2509503 ttgcagatctcgagtcatgtgtgctccaaccaatttaattttatcacttttataaatattttgatgttttatactatcaacttgaatgatgcgactttat 2509602  T
Q  720 tcatt 724  Q
    |||||    
T  2509603 tcatt 2509607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 2508862 - 2509022
Alignment:
Q  15 aaaaaacactaaaattatcgaagtatttttcacattttacatataatacaaaccatttcagttctttatgctaagttagtggagagtgacaatcatattt 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2508862 aaaatacactaaaattatcgaagtatttttcacattttacatataatacaaaccatttcagttctttatgctaagttagtggagagtgacaataatattt 2508961  T
Q  115 tttgttaaaagaaatttttaatattacatgctgaaataatttcatttgatatattaacaaa 175  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2508962 tttgttaaaagtaatttttaatattacatgctgaaataatgtcatttgatatattaacaaa 2509022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 236 - 352
Target Start/End: Original strand, 34062208 - 34062324
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgat 335  Q
    |||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||||||||    
T  34062208 ggaaaatatttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgcttatgtttctctctctttcacaaacattgtgacattgtgat 34062307  T
Q  336 tggtcaatgtcacccaa 352  Q
    |||||||||||||||||    
T  34062308 tggtcaatgtcacccaa 34062324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 231 - 349
Target Start/End: Complemental strand, 48994070 - 48993943
Alignment:
Q  231 aatagggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcat 321  Q
    |||| |||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||||||||||||||    
T  48994070 aatatggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcat 48993971  T
Q  322 tgtggcattgtgattggtcaatgtcacc 349  Q
    |||| |||||||||||||||||||||||    
T  48993970 tgtgacattgtgattggtcaatgtcacc 48993943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 392 - 501
Target Start/End: Original strand, 2509306 - 2509415
Alignment:
Q  392 caatagagagtgtcatttttgttgccattaaatataataaaatcatttagtatttttagaatacgattttcgtaaagaacaattatgatatatataattt 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||   ||| |||||||| ||||||||||||||||||    
T  2509306 caatagagagtgtcatttttgttgccattaaatataataaaatcatttaatatttttataatacgaaaatcgcaaagaacatttatgatatatataattt 2509405  T
Q  492 atacttttaa 501  Q
    ||||||||||    
T  2509406 atacttttaa 2509415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 236 - 349
Target Start/End: Complemental strand, 8337990 - 8337877
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgat 335  Q
    |||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  8337990 ggaaaatacttgggtgacatagagttgggtgacattgaccaatcacaatgccacaatgtttgtgtttctctctctttcacaaacattgtgacattgtgat 8337891  T
Q  336 tggtcaatgtcacc 349  Q
    ||  ||||||||||    
T  8337890 tgaccaatgtcacc 8337877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 235 - 349
Target Start/End: Original strand, 5995358 - 5995481
Alignment:
Q  235 gggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtg 325  Q
    ||||||||||||||||||||||||||| | ||||||||||         |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5995358 gggaaaatacttgggtgacatagagtttgatgacattggtaacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 5995457  T
Q  326 gcattgtgattggtcaatgtcacc 349  Q
    ||||||||||||||||||||||||    
T  5995458 gcattgtgattggtcaatgtcacc 5995481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 237 - 352
Target Start/End: Complemental strand, 46334084 - 46333969
Alignment:
Q  237 gaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgatt 336  Q
    ||||||||||||||||||||||||||| ||||||||  |||||| |||| |||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  46334084 gaaaatacttgggtgacatagagttggatgacattgaccaatcacaatgtcacaatgcttgtgtttttctctctttcacaagcattgtgacattgtgatt 46333985  T
Q  337 ggtcaatgtcacccaa 352  Q
    || |||||||| ||||    
T  46333984 ggccaatgtcatccaa 46333969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 236 - 349
Target Start/End: Complemental strand, 29179745 - 29179623
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  29179745 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 29179646  T
Q  327 cattgtgattggtcaatgtcacc 349  Q
    ||||||||||||||| |||||||    
T  29179645 cattgtgattggtcagtgtcacc 29179623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 236 - 349
Target Start/End: Complemental strand, 49445050 - 49444939
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgat 335  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||  |||||||||||||  |||||||||    
T  49445050 ggaaaatacttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgcttgtgtttctctctc--tcacaagcattgtaacattgtgat 49444953  T
Q  336 tggtcaatgtcacc 349  Q
    || || ||||||||    
T  49444952 tgatcgatgtcacc 49444939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 245 - 349
Target Start/End: Original strand, 29371376 - 29371480
Alignment:
Q  245 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatg 344  Q
    ||||||||||||||||| ||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||     
T  29371376 ttgggtgacatagagttaggtgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaata 29371475  T
Q  345 tcacc 349  Q
    |||||    
T  29371476 tcacc 29371480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 236 - 358
Target Start/End: Complemental strand, 44706932 - 44706800
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||| ||||||||||||||||||||||||||||||         |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  44706932 ggaaaatatttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtgg 44706833  T
Q  327 ca-ttgtgattggtcaatgtcacccaagtgtta 358  Q
    || |||||||||| |||||||||||||||||||    
T  44706832 catttgtgattggccaatgtcacccaagtgtta 44706800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 245 - 352
Target Start/End: Complemental strand, 38674633 - 38674528
Alignment:
Q  245 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatg 344  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||||||||| ||||     
T  38674633 ttgggtgacatagagttgggtgatattggccaatcataatgtcacaatgcttgtgtttct--ctctttcacaagcattgtgacattgtgattggccaata 38674536  T
Q  345 tcacccaa 352  Q
    ||||||||    
T  38674535 tcacccaa 38674528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 243 - 349
Target Start/End: Original strand, 15220817 - 15220923
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaa 342  Q
    ||||||||||||| ||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||  ||||||||||| |||    
T  15220817 acttgggtgacatggagttgggtgacattggtcaatcacgatctcacaatgcttgtgtttctctctctttcacaagcattgtgagattgtgattggccaa 15220916  T
Q  343 tgtcacc 349  Q
    | |||||    
T  15220917 tatcacc 15220923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 48498405 - 48498527
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtga---------cattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    ||||||||||||||||||||||||||||||||         ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||      
T  48498405 ggaaaatacttgggtgacatagagttgggtgacatttgtgacattggtcaatcataataccacaatgtttgtgtttctctctctttcacaagcatggtaa 48498504  T
Q  327 cattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||    
T  48498505 cattgtgattggtcaatgtcacc 48498527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 260 - 349
Target Start/End: Complemental strand, 741617 - 741528
Alignment:
Q  260 ttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  741617 ttgggtgacattggtcgatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgggcaatgtcacc 741528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 236 - 352
Target Start/End: Original strand, 37155036 - 37155161
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||||||||||||||||||||| ||||||||||||         |||||| |||| |||||||||||||||||||||||||||||||| ||||||     
T  37155036 ggaaaatacttgggtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagtattgtga 37155135  T
Q  327 cattgtgattggtcaatgtcacccaa 352  Q
    |||||||||||| |||||||||||||    
T  37155136 cattgtgattggccaatgtcacccaa 37155161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 264 - 348
Target Start/End: Complemental strand, 17127675 - 17127591
Alignment:
Q  264 gtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcac 348  Q
    |||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17127675 gtgacattgaccaatcaaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcac 17127591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 2509217 - 2509284
Alignment:
Q  168 ttaacaaaaatctgttgtaaaatcacatgaatgataaatagttaaacgtttgtttagtcagttaatag 235  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2509217 ttaaaaaaaatctgttgtaaaatcacatgaatgataaatagttaaacgtttgtttagtcggttaatag 2509284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 242 - 349
Target Start/End: Original strand, 33219578 - 33219685
Alignment:
Q  242 tacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtca 341  Q
    |||||| ||||| |||| |||| |||||||| ||||||| ||||  ||||||||||||||| ||||||||||||||||||| || ||||||||||| |||    
T  33219578 tacttgagtgacgtagaattggatgacattgatcaatcacaatgttacaatgcttgtgtttttctctctttcacaagcattatgacattgtgattgatca 33219677  T
Q  342 atgtcacc 349  Q
    ||||||||    
T  33219678 atgtcacc 33219685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 243 - 352
Target Start/End: Original strand, 9157307 - 9157425
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtg 333  Q
    ||||| ||||||||||||||||||||||||||         |||||| |||| ||||||||||||||||||||||||||| |||||||||||  ||||||    
T  9157307 acttgtgtgacatagagttgggtgacattggtaacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttctcaagcattgtgatattgtg 9157406  T
Q  334 attggtcaatgtcacccaa 352  Q
    |||| ||||||||| ||||    
T  9157407 attgatcaatgtcaaccaa 9157425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 263 - 349
Target Start/End: Complemental strand, 32540860 - 32540774
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||  |||||| ||||  |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  32540860 ggtgacattgaccaatcacaatgttacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgccacc 32540774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 1819573 - 1819512
Alignment:
Q  291 atgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  1819573 atgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcacccaa 1819512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 263 - 352
Target Start/End: Original strand, 4609022 - 4609111
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||  | |||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  4609022 ggtgacattgacccatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaatgtcacccaa 4609111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 243 - 337
Target Start/End: Complemental strand, 1091685 - 1091582
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtg 333  Q
    ||||||||||||||||||||||||| ||||||         |||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||    
T  1091685 acttgggtgacatagagttgggtgatattggtgactttgaccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtg 1091586  T
Q  334 attg 337  Q
    ||||    
T  1091585 attg 1091582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 258 - 349
Target Start/End: Complemental strand, 48605064 - 48604973
Alignment:
Q  258 agttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||| |||||||||| |||| |||||| ||||||||||| |||||||||||||||||||  |||||| |||||||||||  ||||||||||    
T  48605064 agttgagtgacattggccaattataatgtcacaatgcttgcgtttctctctctttcacaaatattgtgacattgtgattgaccaatgtcacc 48604973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 243 - 349
Target Start/End: Original strand, 47303401 - 47303507
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaa 342  Q
    ||||| |||| |||||||| ||||| ||||  |||||| |||| || |||| ||||||||||||||||||||||| ||||||| |||||||||||  |||    
T  47303401 acttgagtgatatagagttaggtgatattgaccaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgtgattgaccaa 47303500  T
Q  343 tgtcacc 349  Q
    |||||||    
T  47303501 tgtcacc 47303507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 4609129 - 4609072
Alignment:
Q  242 tacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  4609129 tacttgtgtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtg 4609072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 36290549 - 36290457
Alignment:
Q  242 tacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtg 325  Q
    |||||||||||||||||||||||||||||||||         |||||| |||| ||||||  |||||||||||||||||||||||||||||||    
T  36290549 tacttgggtgacatagagttgggtgacattggtggcattgaccaatcacaatgtcacaatatttgtgtttctctctctttcacaagcattgtg 36290457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 38674504 - 38674567
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||| |||| |||||||||||||    
T  38674504 ggaaaatacttgggtgacatggagttgggtgatattggccaatcacaatgtcacaatgcttgtg 38674567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 45728337 - 45728396
Alignment:
Q  287 cacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtc 346  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||  |||||||    
T  45728337 cacaatgcttgtgtttctctctctttcacaagcattatgacattgtgattgaccaatgtc 45728396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 5695004 - 5694942
Alignment:
Q  260 ttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcatt 322  Q
    ||||||||||||||||||| | |||| ||||||  ||||||||||||||||||||||||||||    
T  5695004 ttgggtgacattggtcaattacaatgtcacaatatttgtgtttctctctctttcacaagcatt 5694942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 28928859 - 28928805
Alignment:
Q  295 ttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||| |||| |||||||||||| ||||||||||    
T  28928859 ttgtgtttctctctctttcacaagcactgtgacattgtgattggccaatgtcacc 28928805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 243 - 297
Target Start/End: Original strand, 48823891 - 48823945
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttg 297  Q
    ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||    
T  48823891 acttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttg 48823945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 46333952 - 46334008
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||||||||||||||| ||||||||| |||||| |||| |||||||||||||    
T  46333952 acttgggtgacatagagttggatgacattggccaatcacaatgtcacaatgcttgtg 46334008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 46931986 - 46932025
Alignment:
Q  235 gggaaaatacttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46931986 gggaaaatacttgggtgacatagagttgggtgacattggt 46932025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 1819502 - 1819551
Alignment:
Q  250 tgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||||||||    
T  1819502 tgacatagagttgggtgacattgatcaatcacaatgtcacaatgcttgtg 1819551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 19711251 - 19711203
Alignment:
Q  304 tctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||    
T  19711251 tctctctttcacatgcattgtaacattgtgattggtcaatgtcacccaa 19711203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 28928785 - 28928841
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||||||||||||| ||||||||||| |||||| |||| |||| ||||||||    
T  28928785 acttgggtgacatagagtttggtgacattggccaatcacaatgtcacagtgcttgtg 28928841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 32157658 - 32157602
Alignment:
Q  242 tacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgt 298  Q
    ||||||| |||||||||||| |||||||||||||||||| | || ||||||||||||    
T  32157658 tacttggatgacatagagtttggtgacattggtcaatcacagtgtcacaatgcttgt 32157602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 48993993 - 48994029
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||||||||||||||    
T  48993993 cacaagcattgtggcattgtgattggtcaatgtcacc 48994029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 8337927 - 8337966
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  8337927 cacaaacattgtggcattgtgattggtcaatgtcacccaa 8337966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 49444987 - 49445026
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  49444987 cacaagcattgtggcattgtgattggccaatgtcacccaa 49445026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 21630068 - 21630118
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttc 313  Q
    ||||||||||  |||||| |||| |||||||||||||||||||||||||||    
T  21630068 ggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttc 21630118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 47303521 - 47303471
Alignment:
Q  249 gtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||| |||||    
T  47303521 gtgacatagagttaggtgacattggtcaatcacaatgtcacaatgtttgtg 47303471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 37155179 - 37155122
Alignment:
Q  243 acttgggtgaca-tagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||||||||| ||||||||||||||||||| |||||| |||| |||||| ||||||    
T  37155179 acttgggtgacaatagagttgggtgacattggccaatcacaatgtcacaatacttgtg 37155122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 7788259 - 7788303
Alignment:
Q  240 aatacttgggtgacatagagttgggtgacattggtcaatcataat 284  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||    
T  7788259 aatacttgggtgacatagagttgggcgatgttggtcaatcataat 7788303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 21630104 - 21630068
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||||| |||||||||||||||||||||||    
T  21630104 cacaagcattgtgacattgtgattggtcaatgtcacc 21630068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 28395699 - 28395663
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||||| |||||||||||||||||||||||    
T  28395699 cacaagcattgtgacattgtgattggtcaatgtcacc 28395663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 29179673 - 29179709
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||| ||||||||||    
T  29179673 cacaagcattgtggcattgtgattggccaatgtcacc 29179709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 34062268 - 34062232
Alignment:
Q  316 aagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||||||||||||||| |||||||||||||    
T  34062268 aagcattgtggcattgtgattggccaatgtcacccaa 34062232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 46334022 - 46334061
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  46334022 cacaagcattgtgacattgtgattggtcaatgtcatccaa 46334061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 274
Target Start/End: Original strand, 48993914 - 48993945
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||||    
T  48993914 acttgggtgacatagagttgggtgacattggt 48993945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 274
Target Start/End: Original strand, 49444910 - 49444941
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||||    
T  49444910 acttgggtgacatagagttgggtgacattggt 49444941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 9157442 - 9157388
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttg 297  Q
    ||||| ||||||||||||||| |||||||| ||||||| |||  |||||||||||    
T  9157442 acttgtgtgacatagagttggttgacattgatcaatcacaatatcacaatgcttg 9157388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 34062339 - 34062285
Alignment:
Q  245 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||| |||||||||||||||||||||  |||||| |||| ||||||| |||||    
T  34062339 ttgggtaacatagagttgggtgacattgaccaatcacaatgtcacaatgtttgtg 34062285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 319 - 349
Target Start/End: Original strand, 46932064 - 46932094
Alignment:
Q  319 cattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||||||||    
T  46932064 cattgtggcattgtgattggtcaatgtcacc 46932094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 5694896 - 5694933
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatca 280  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  5694896 acttgagtgacatagagtttggtgacattggtcaatca 5694933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 274
Target Start/End: Complemental strand, 15220950 - 15220921
Alignment:
Q  245 ttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||    
T  15220950 ttgggtgacatagagttgggtgacattggt 15220921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 28395663 - 28395708
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctct 308  Q
    ||||||||||  |||||| |||| ||||||||||||||||||||||    
T  28395663 ggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctct 28395708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 48823945 - 48823908
Alignment:
Q  315 caagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  48823945 caagcattgtgacattgtgattggccaatgtcacccaa 48823908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 3e-50; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 42375009 - 42375122
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgat 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42375009 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgat 42375108  T
Q  336 tggtcaatgtcacc 349  Q
    || |||||||||||    
T  42375109 tgatcaatgtcacc 42375122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 236 - 352
Target Start/End: Complemental strand, 47404724 - 47404608
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgat 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  47404724 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcacaatgccacaatgcttgggtttctctctctttcacaagcattgtgacattgtgat 47404625  T
Q  336 tggtcaatgtcacccaa 352  Q
    ||  |||||||||||||    
T  47404624 tgaccaatgtcacccaa 47404608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 234 - 352
Target Start/End: Complemental strand, 31430599 - 31430484
Alignment:
Q  234 agggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtg 333  Q
    |||||||||||||||||||||||||||||||||||||||| |||| | ||||||||   | |||||||||||||||||||| |||||||||| |||||||    
T  31430599 agggaaaatacttgggtgacatagagttgggtgacattggccaattacaatgccac---gtttgtgtttctctctctttcataagcattgtgacattgtg 31430503  T
Q  334 attggtcaatgtcacccaa 352  Q
    |||||||||||||||||||    
T  31430502 attggtcaatgtcacccaa 31430484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 235 - 349
Target Start/End: Complemental strand, 23444418 - 23444295
Alignment:
Q  235 gggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtg 325  Q
    ||||||||| ||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23444418 gggaaaatatttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 23444319  T
Q  326 gcattgtgattggtcaatgtcacc 349  Q
     |||||||||||||||||||||||    
T  23444318 acattgtgattggtcaatgtcacc 23444295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 243 - 352
Target Start/End: Original strand, 52028555 - 52028664
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaa 342  Q
    ||||||||||||||||||||||||| ||||| ||||||  ||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||    
T  52028555 acttgggtgacatagagttgggtgatattggccaatcacgatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaa 52028654  T
Q  343 tgtcacccaa 352  Q
    ||||||||||    
T  52028655 tgtcacccaa 52028664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 243 - 348
Target Start/End: Complemental strand, 55090128 - 55090023
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaa 342  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||  |||    
T  55090128 acttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttgtgtctctctctctttcacaagcattgtgacattgtgattgaccaa 55090029  T
Q  343 tgtcac 348  Q
    ||||||    
T  55090028 tgtcac 55090023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 6271692 - 6271814
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtg---------acattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||||||||||||||||||||||||||         ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  6271692 ggaaaatacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 6271791  T
Q  327 cattgtgattggtcaatgtcacc 349  Q
    |||||||||||| ||||||||||    
T  6271792 cattgtgattggccaatgtcacc 6271814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 263 - 349
Target Start/End: Original strand, 47661868 - 47661954
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47661868 ggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 47661954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 349
Target Start/End: Original strand, 51265436 - 51265557
Alignment:
Q  237 gaaaatacttgggtgacatagagttgggtg---------acattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggc 327  Q
    ||||||||||||||||||||||||||||||         ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  51265436 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgac 51265535  T
Q  328 attgtgattggtcaatgtcacc 349  Q
    ||| ||||||||||||||||||    
T  51265536 attatgattggtcaatgtcacc 51265557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 53954609 - 53954722
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgat 335  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||| |||| ||||||||| ||||||||| ||||||||||||||||||| |||||| ||    
T  53954609 ggaaaatacttgggtgatataaagttgggtgacattggccaatcacaatgtcacaatgctagtgtttctcactctttcacaagcattgtgacattgtaat 53954708  T
Q  336 tggtcaatgtcacc 349  Q
    ||| ||||||||||    
T  53954709 tggacaatgtcacc 53954722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 40789192 - 40789291
Alignment:
Q  250 tgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||| ||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||    
T  40789192 tgacatagagtttggtgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatatcacc 40789291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 50384193 - 50384128
Alignment:
Q  287 cacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  50384193 cacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaa 50384128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 243 - 352
Target Start/End: Complemental strand, 24006194 - 24006093
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaa 342  Q
    ||||||||||||||||||||||||||||||  ||||||        ||||| || |||||||||||||||||||||||||||| |||||||||||| |||    
T  24006194 acttgggtgacatagagttgggtgacattgaccaatca--------caatgtttatgtttctctctctttcacaagcattgtgtcattgtgattggccaa 24006103  T
Q  343 tgtcacccaa 352  Q
    ||||||||||    
T  24006102 tgtcacccaa 24006093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 30861920 - 30861824
Alignment:
Q  238 aaaatacttgggtgacatagagttgg---------gtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtg 325  Q
    ||||||||||||||||||||||||||         |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30861920 aaaatacttgggtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 30861824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 263 - 349
Target Start/End: Original strand, 35682192 - 35682278
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||| |||||| |||| || ||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  35682192 ggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtgacattgtgatcggtcaatgtcacc 35682278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 26186124 - 26186037
Alignment:
Q  265 tgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaagt 354  Q
    ||||||||| |||||| |||  ||||||||||||||||||||||  ||||||||||||||| |||||||||||  |||||||||||||||    
T  26186124 tgacattggccaatcacaatttcacaatgcttgtgtttctctct--ttcacaagcattgtgacattgtgattgaccaatgtcacccaagt 26186037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 47404591 - 47404647
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  47404591 acttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtg 47404647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 50384111 - 50384167
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  50384111 acttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttgtg 50384167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 55090002 - 55090058
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  55090002 acttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttgtg 55090058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 28694008 - 28693946
Alignment:
Q  290 aatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    |||| ||||||||||||||||||||||| |||||||  |||||||||||||||||||| ||||    
T  28694008 aatgtttgtgtttctctctctttcacaaacattgtgatattgtgattggtcaatgtcatccaa 28693946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 24006076 - 24006132
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||||||||||| |||||||||||||||| |||||| |||| |||||||||||||    
T  24006076 acttgggtgacatacagttgggtgacattggccaatcacaatgacacaatgcttgtg 24006132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 25818461 - 25818401
Alignment:
Q  287 cacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtca 347  Q
    ||||||| ||||||||||||||||||||||| ||||||| |||||||||||  ||||||||    
T  25818461 cacaatgattgtgtttctctctctttcacaatcattgtgacattgtgattgaccaatgtca 25818401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 238 - 338
Target Start/End: Original strand, 38714824 - 38714924
Alignment:
Q  238 aaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattg 337  Q
    |||||| ||||||||||||||||| ||||| ||||| |||||| |||| || |||  || ||||||| | |||||||||| ||||||| ||||| |||||    
T  38714824 aaaatatttgggtgacatagagttaggtgatattggccaatcacaatgtcataatatttatgtttctatttctttcacaaacattgtgacattgagattg 38714923  T
Q  338 g 338  Q
    |    
T  38714924 g 38714924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 44379959 - 44380042
Alignment:
Q  266 gacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||| |||| |||||| ||||||||||| |||||||||| ||| | ||| |||||  ||||||||||||||||| |||||    
T  44379959 gacattggccaattataatgtcacaatgcttgcgtttctctctattttataagtattgtaacattgtgattggtcaatatcacc 44380042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 257 - 337
Target Start/End: Complemental strand, 45591520 - 45591448
Alignment:
Q  257 gagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattg 337  Q
    ||||||||||||||||||||||||        ||||| ||||||||||||||||||||||||||||||| |||| ||||||    
T  45591520 gagttgggtgacattggtcaatca--------caatgtttgtgtttctctctctttcacaagcattgtgacattatgattg 45591448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 31430467 - 31430520
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgctt 296  Q
    ||||||||||||||||||||||||||||||  |||||| |||| ||||||||||    
T  31430467 acttgggtgacatagagttgggtgacattgaccaatcacaatgtcacaatgctt 31430520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 264 - 349
Target Start/End: Original strand, 47762635 - 47762720
Alignment:
Q  264 gtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||  |||||| ||||  |||||| || |||||||||||||||||||||||||||| |||| || |||  ||||||||||    
T  47762635 gtgacattgaccaatcacaatgttacaatgtttatgtttctctctctttcacaagcattgtgacattatggttgaccaatgtcacc 47762720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 40789311 - 40789255
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||||||||||||| ||||| ||||| |||||| |||| |||||||||||||    
T  40789311 acttgggtgacatagagtttggtgatattggccaatcacaatgtcacaatgcttgtg 40789255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 45591416 - 45591472
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||| |||| ||||||||||||| |||| ||||||||||||| |||||||||||||    
T  45591416 acttgtgtgatatagagttgggtggcattcgtcaatcataatgtcacaatgcttgtg 45591472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 55089888 - 55089935
Alignment:
Q  248 ggtgacatagagttgggtgacattggtcaatcataatgccacaatgct 295  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||||    
T  55089888 ggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgct 55089935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 361
Target Start/End: Complemental strand, 31532801 - 31532703
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaagtgttatcc 361  Q
    ||||||||||  |||||| || | ||||||| |||| ||||||||||||| |||   |||||| |||||||||||  ||||||||| |||||| |||||    
T  31532801 ggtgacattgaccaatcacaacgtcacaatgtttgtatttctctctcttttacatatattgtgacattgtgattgaacaatgtcacacaagtgctatcc 31532703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 17285807 - 17285848
Alignment:
Q  314 acaagcattgtggcattgtgattggtcaatgtcacccaagtg 355  Q
    ||||| |||||| |||||||||||||||||||||||||||||    
T  17285807 acaagtattgtgacattgtgattggtcaatgtcacccaagtg 17285848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 3862622 - 3862658
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||| ||||||||||    
T  3862622 cacaagcattgtggcattgtgattggccaatgtcacc 3862658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 3871379 - 3871415
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||| ||||||||||    
T  3871379 cacaagcattgtggcattgtgattggccaatgtcacc 3871415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 6271764 - 6271728
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||| ||||||||||    
T  6271764 cacaagcattgtggcattgtgattggccaatgtcacc 6271728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 23444345 - 23444381
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||| ||||||||||    
T  23444345 cacaagcattgtggcattgtgattggccaatgtcacc 23444381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 30861850 - 30861886
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||| ||||||||||    
T  30861850 cacaagcattgtggcattgtgattggccaatgtcacc 30861886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 47661904 - 47661868
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||| ||||||||||    
T  47661904 cacaagcattgtggcattgtgattggccaatgtcacc 47661868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 51265507 - 51265471
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||| ||||||||||    
T  51265507 cacaagcattgtggcattgtgattggccaatgtcacc 51265471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 52028673 - 52028625
Alignment:
Q  251 gacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||||| |||||||||||||| |||||| |||| |||||||||||||    
T  52028673 gacatagaattgggtgacattggccaatcacaatgtcacaatgcttgtg 52028625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 3862658 - 3862619
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgttt 302  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  3862658 ggtgacattggccaatcacaatgccacaatgcttgtgttt 3862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 3871415 - 3871376
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgttt 302  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  3871415 ggtgacattggccaatcacaatgccacaatgcttgtgttt 3871376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 26186039 - 26186078
Alignment:
Q  260 ttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  26186039 ttgggtgacattggtcaatcacaatgtcacaatgcttgtg 26186078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 42375072 - 42375033
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  42375072 cacaagcattgtggcattgtgattgaccaatgtcacccaa 42375033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 42375151 - 42375120
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||||    
T  42375151 acttgggtgacatagagttgggtgacattggt 42375120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 19184591 - 19184554
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatca 280  Q
    ||||||||||| || |||||||||||||||||||||||    
T  19184591 acttgggtgacgtaaagttgggtgacattggtcaatca 19184554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 47404663 - 47404700
Alignment:
Q  315 caagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    |||||||||||||||||||||||  |||||||||||||    
T  47404663 caagcattgtggcattgtgattgaccaatgtcacccaa 47404700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 274
Target Start/End: Complemental strand, 47661981 - 47661952
Alignment:
Q  245 ttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||    
T  47661981 ttgggtgacatagagttgggtgacattggt 47661952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 1e-49; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 237 - 349
Target Start/End: Original strand, 3899839 - 3899951
Alignment:
Q  237 gaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgatt 336  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3899839 gaaaatacttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgatt 3899938  T
Q  337 ggtcaatgtcacc 349  Q
    |||||||||||||    
T  3899939 ggtcaatgtcacc 3899951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 235 - 349
Target Start/End: Original strand, 16971142 - 16971256
Alignment:
Q  235 gggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtga 334  Q
    |||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16971142 gggaaaatacttgggtgacatagacttgggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 16971241  T
Q  335 ttggtcaatgtcacc 349  Q
    |||||||||||||||    
T  16971242 ttggtcaatgtcacc 16971256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 234 - 349
Target Start/End: Original strand, 2953195 - 2953302
Alignment:
Q  234 agggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtg 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||| |||||||    
T  2953195 agggaaaatacttgggtgacatagagttgggtgacattggtcaatca--------caatgcttgtgtttctctctctttcacaagcattgtgacattgtg 2953286  T
Q  334 attggtcaatgtcacc 349  Q
    ||||| ||||||||||    
T  2953287 attggccaatgtcacc 2953302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 243 - 349
Target Start/End: Original strand, 28818923 - 28819029
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaa 342  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||||||||||| |||| ||||||  |||    
T  28818923 acttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatacttgtatttctctctctttcacaagcattgtgacattatgattgaccaa 28819022  T
Q  343 tgtcacc 349  Q
    |||||||    
T  28819023 tgtcacc 28819029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 263 - 352
Target Start/End: Original strand, 16439164 - 16439253
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  16439164 ggtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcacccaa 16439253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 19655148 - 19655270
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtg---------acattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||||||||||||||||||||||||||         ||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||     
T  19655148 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtga 19655247  T
Q  327 cattgtgattggtcaatgtcacc 349  Q
    |||||||||||| ||||||||||    
T  19655248 cattgtgattggacaatgtcacc 19655270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 263 - 349
Target Start/End: Original strand, 29699393 - 29699479
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  29699393 ggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 29699479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 263 - 352
Target Start/End: Complemental strand, 3180172 - 3180083
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||||    
T  3180172 ggtgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtgacattatgattgatcaatgtcacccaa 3180083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 235 - 352
Target Start/End: Original strand, 19598321 - 19598446
Alignment:
Q  235 gggaaaatacttgggtgacatagagttgggt---------gacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtg 325  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||    
T  19598321 gggaaaatacttgggtgacatagagttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtgtttctctctctttcacaagcatt-tg 19598419  T
Q  326 gcattgtgattggtcaatgtcacccaa 352  Q
     |||| |||||||| ||||||||||||    
T  19598420 acattatgattggttaatgtcacccaa 19598446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 291087 - 291209
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||||||| ||||||||||||||||||||||||||         |||||| ||||||||||||||||| ||||| |||||||||||| |||||||     
T  291087 ggaaaatacttgagtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtatttctttctctttcacaaacattgtga 291186  T
Q  327 cattgtgattggtcaatgtcacc 349  Q
    ||||||||||| |||||||||||    
T  291187 cattgtgattgatcaatgtcacc 291209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 263 - 349
Target Start/End: Complemental strand, 30117940 - 30117854
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||| |||||    
T  30117940 ggtgatattggtcaatcataatgccacaatgcttgtgtttctctctttttcataaacattgtgacattgtgattggtcaatatcacc 30117854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 243 - 343
Target Start/End: Complemental strand, 38134505 - 38134405
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaa 342  Q
    ||||||| ||||||||||||| ||| ||||| |||||| |||| |||||||||||||||||| |||||||||| ||||||||| |||||||||||| |||    
T  38134505 acttgggcgacatagagttggatgatattggccaatcacaatgtcacaatgcttgtgtttctttctctttcactagcattgtgacattgtgattggccaa 38134406  T
Q  343 t 343  Q
    |    
T  38134405 t 38134405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 243 - 348
Target Start/End: Original strand, 16802450 - 16802555
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaa 342  Q
    |||| ||| ||||| | |||||||||||||| |||||| ||||  |||||  |||||||||||||||||| |||||||||||| |||| |||||||||||    
T  16802450 acttaggtaacataaatttgggtgacattggccaatcacaatgtaacaatatttgtgtttctctctcttttacaagcattgtgacattctgattggtcaa 16802549  T
Q  343 tgtcac 348  Q
    ||||||    
T  16802550 tgtcac 16802555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 243 - 336
Target Start/End: Original strand, 26662405 - 26662498
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgatt 336  Q
    ||||| ||||||||||||||||||||||||  |||||| ||||  ||| ||||||||||||||||| ||||||||| |||||| ||||||||||    
T  26662405 acttgtgtgacatagagttgggtgacattgaccaatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtgatt 26662498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 243 - 336
Target Start/End: Original strand, 26934000 - 26934093
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgatt 336  Q
    ||||| ||||||||||||||||||||||||  |||||| ||||  ||| ||||||||||||||||| ||||||||| |||||| ||||||||||    
T  26934000 acttgtgtgacatagagttgggtgacattgaccaatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtgatt 26934093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 238 - 349
Target Start/End: Complemental strand, 2094074 - 2093963
Alignment:
Q  238 aaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattg 337  Q
    ||||||||| | ||||||||| |||||||| ||||   ||||| | |  || ||||||||||||||||||||||||||||||||| || |||||||||||    
T  2094074 aaaatacttagttgacatagaattgggtgatattgactaatcacactatcataatgcttgtgtttctctctctttcacaagcattatgacattgtgattg 2093975  T
Q  338 gtcaatgtcacc 349  Q
     |||||||||||    
T  2093974 atcaatgtcacc 2093963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 12913829 - 12913903
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattg 337  Q
    ||||||||||| |||||| |||| |||||| ||||||| ||||||||||||||||||||| || |||||||||||    
T  12913829 ggtgacattggccaatcacaatgtcacaattcttgtgtatctctctctttcacaagcattatgacattgtgattg 12913903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 3180066 - 3180122
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  3180066 acttgtgtgacatagagttgggtgacattgatcaatcataatgtcacaatgtttgtg 3180122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 16439264 - 16439214
Alignment:
Q  249 gtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||||||||    
T  16439264 gtgacatagagttgggtgacattgatcaatcacaatgtcacaatgcttgtg 16439214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 16971206 - 16971165
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaagt 354  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  16971206 cacaagcattgtggcattgtgattggccaatgtcacccaagt 16971165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 3899901 - 3899862
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  3899901 cacaagcattgtggcattgtgattggccaatgtcacccaa 3899862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 349
Target Start/End: Original strand, 2356287 - 2356383
Alignment:
Q  249 gtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcac 348  Q
    ||||||||||||||| ||||||| | |||| | ||||  | ||||||||||||  ||||||||||| |||||||||| || ||||||||| |||||||||    
T  2356287 gtgacatagagttgg-tgacattaggcaattacaatgttataatgcttgtgtt--tctctctttcataagcattgtgaca-tgtgattggccaatgtcac 2356382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 19598463 - 19598408
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||||||||||||||||||||||||||   ||||||||||| || ||||||||||    
T  19598463 acttgggtgacatagagttgggtgacattaaccaatcataatgtca-aatgcttgtg 19598408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 28819029 - 28818993
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||||||||||||||||| |||||||||||||    
T  28819029 ggtgacattggtcaatcataatgtcacaatgcttgtg 28818993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 29699429 - 29699393
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||| ||||||||||    
T  29699429 cacaagcattgtggcattgtgattggccaatgtcacc 29699393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 349
Target Start/End: Complemental strand, 291158 - 291123
Alignment:
Q  314 acaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||||||||||||||||| ||||||||||    
T  291158 acaagcattgtggcattgtgattggccaatgtcacc 291123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 2953331 - 2953300
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||||    
T  2953331 acttgggtgacatagagttgggtgacattggt 2953300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 16971285 - 16971254
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||||    
T  16971285 acttgggtgacatagagttgggtgacattggt 16971254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 6912310 - 6912359
Alignment:
Q  250 tgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||||||||| | ||||||| |||||||| |||| |||||||||||||    
T  6912310 tgacatagagttagttgacattagtcaatcacaatgtcacaatgcttgtg 6912359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 14167223 - 14167178
Alignment:
Q  304 tctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||||||| |||||| |||||||||| ||||| ||||||    
T  14167223 tctctctttcacaaggattgtgacattgtgattcgtcaaagtcacc 14167178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 37325629 - 37325584
Alignment:
Q  304 tctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||||||| |||||| |||||||||| ||||||| ||||    
T  37325629 tctctctttcacaaggattgtgacattgtgattcgtcaatgccacc 37325584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 274
Target Start/End: Original strand, 39777050 - 39777079
Alignment:
Q  245 ttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||    
T  39777050 ttgggtgacatagagttgggtgacattggt 39777079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 234 - 349
Target Start/End: Complemental strand, 6217365 - 6217250
Alignment:
Q  234 agggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtg 333  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6217365 agggaaaatacttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtg 6217266  T
Q  334 attggtcaatgtcacc 349  Q
    ||||| ||||||||||    
T  6217265 attggccaatgtcacc 6217250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 37961705 - 37961817
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgat 335  Q
    |||||||||||||||| ||||||||||||||||||||  | |||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  37961705 ggaaaatacttgggtggcatagagttgggtgacattgaccgatcacaatgccataatgtttgtgtttctctctctttcacaagcattgtggcattgtgat 37961804  T
Q  336 tggtcaatgtcac 348  Q
    |||||||||||||    
T  37961805 tggtcaatgtcac 37961817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 38933586 - 38933699
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgat 335  Q
    ||||||||||| |||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  38933586 ggaaaatacttaggtgacatagagttgggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattatgat 38933685  T
Q  336 tggtcaatgtcacc 349  Q
    ||| ||| ||||||    
T  38933686 tggccaacgtcacc 38933699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 237 - 349
Target Start/End: Complemental strand, 29925708 - 29925596
Alignment:
Q  237 gaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgatt 336  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| || ||||||||      
T  29925708 gaaaatacttgggtaacatagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattctgacattgtgagg 29925609  T
Q  337 ggtcaatgtcacc 349  Q
    || ||||||||||    
T  29925608 ggccaatgtcacc 29925596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 249 - 352
Target Start/End: Original strand, 2828596 - 2828699
Alignment:
Q  249 gtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcac 348  Q
    ||||||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||    
T  2828596 gtgacatagagttgggtgacattggccaatcacaatgtcaaaatgcttgtgtttctctctctttcagaagcattgtgacattgtgattggccaatgtcac 2828695  T
Q  349 ccaa 352  Q
    ||||    
T  2828696 ccaa 2828699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 243 - 349
Target Start/End: Complemental strand, 14229484 - 14229379
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||  |||    
T  14229484 acttgggtgacatagagttggatgacattgg-caatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaa 14229386  T
Q  343 tgtcacc 349  Q
    |||||||    
T  14229385 tgtcacc 14229379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 236 - 349
Target Start/End: Complemental strand, 29508839 - 29508716
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||||||||||||||||||||||||||| ||||||         |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  29508839 ggaaaatacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtgg 29508740  T
Q  327 ca-ttgtgattggtcaatgtcacc 349  Q
    || |||||||||||||||||||||    
T  29508739 catttgtgattggtcaatgtcacc 29508716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 16514414 - 16514536
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtg---------acattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||||||||||||||||||||||||||         ||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||     
T  16514414 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcactatgccataatgcttgtgtttctctctctttcacaagcattgtga 16514513  T
Q  327 cattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||    
T  16514514 cattgtgattggtcaatgtcacc 16514536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 243 - 352
Target Start/End: Original strand, 2893969 - 2894078
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaa 342  Q
    ||||||||||||||||||||||||||||||| |||||| |||  |||||||||||| |||||||||||||||||||||||||| || ||||||||  |||    
T  2893969 acttgggtgacatagagttgggtgacattggccaatcacaatctcacaatgcttgtatttctctctctttcacaagcattgtgacactgtgattgaccaa 2894068  T
Q  343 tgtcacccaa 352  Q
    ||||| ||||    
T  2894069 tgtcatccaa 2894078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 15011306 - 15011391
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcac 348  Q
    ||||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  15011306 ggtgatattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcac 15011391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 263 - 348
Target Start/End: Complemental strand, 37762113 - 37762028
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcac 348  Q
    |||||||| ||||||||| |||  |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||    
T  37762113 ggtgacatgggtcaatcacaatatcacaatgcttgtgtttctttctctttcacaagcattgcgacattgtgattggtcaatgtcac 37762028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 275 - 349
Target Start/End: Complemental strand, 14470692 - 14470618
Alignment:
Q  275 caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||| |||| ||||||| |||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  14470692 caatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgcaacattgtgattggtcaatgtcacc 14470618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 6721977 - 6722062
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcac 348  Q
    ||||||||||  |||||| |||  ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||    
T  6721977 ggtgacattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaaacattgtgacattgtgattggccaatatcac 6722062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 15011421 - 15011356
Alignment:
Q  234 agggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||| ||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||    
T  15011421 agggataatacttgggtgacatagagttgagtgacattggccaatcacaatgtcacaatgcttgtg 15011356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 236 - 352
Target Start/End: Complemental strand, 9173129 - 9173004
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||| || |||||||||||||||||||||||||||         |||||| ||||||||||||||||| ||||||| ||||| | ||||||| |||    
T  9173129 ggaaaatatttaggtgacatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttgtatttctctttcttttataagcattatgg 9173030  T
Q  327 cattgtgattggtcaatgtcacccaa 352  Q
    |||| ||||    |||||||||||||    
T  9173029 cattctgatgaaccaatgtcacccaa 9173004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 9172984 - 9173040
Alignment:
Q  240 aatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgctt 296  Q
    |||||||||||||||||||||||||||||||||||  |||| ||||||| |||||||    
T  9172984 aatacttgggtgacatagagttgggtgacattggttcatcagaatgccataatgctt 9173040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 38933649 - 38933610
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38933649 cacaagcattgtggcattgtgattggtcaatgtcacccaa 38933610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 2894093 - 2894039
Alignment:
Q  245 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||||||||||||| |||||||||||||||| | || |||||||||||||    
T  2894093 ttgggtgacatagagttggatgacattggtcaatcacagtgtcacaatgcttgtg 2894039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 14464561 - 14464617
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||| |||||||||||||| ||||||||||||||||| |||| |||||| ||||||    
T  14464561 acttgtgtgacatagagttgagtgacattggtcaatcacaatgtcacaatacttgtg 14464617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 267 - 337
Target Start/End: Original strand, 24115950 - 24116020
Alignment:
Q  267 acattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattg 337  Q
    ||||||| |||||| ||||  ||||||| |||||||| | ||||||||||||||||| | |||||||||||    
T  24115950 acattggccaatcacaatgttacaatgcctgtgtttcacactctttcacaagcattgcgacattgtgattg 24116020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 37632981 - 37633019
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggt 274  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  37632981 ggaaaatacttgggtgacatagagtttggtgacattggt 37633019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 2143998 - 2143943
Alignment:
Q  249 gtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttct 304  Q
    |||||||||||||| ||||| |||| |||||| |||| || |||||||||||||||    
T  2143998 gtgacatagagttgagtgacgttggccaatcacaatgtcataatgcttgtgtttct 2143943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 6217300 - 6217339
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  6217300 cacaaacattgtggcattgtgattggccaatgtcacccaa 6217339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 29925646 - 29925685
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  29925646 cacaaacattgtggcattgtgattggccaatgtcacccaa 29925685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 38933728 - 38933697
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||||    
T  38933728 acttgggtgacatagagttgggtgacattggt 38933697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 1992233 - 1992271
Alignment:
Q  234 agggaaaatacttgggtgacatagagttgggtgacattg 272  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  1992233 agggaaaatacttggatgacatagagttaggtgacattg 1992271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 244 - 274
Target Start/End: Original strand, 6217222 - 6217252
Alignment:
Q  244 cttgggtgacatagagttgggtgacattggt 274  Q
    |||||||||||||||||||||||||||||||    
T  6217222 cttgggtgacatagagttgggtgacattggt 6217252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 14892318 - 14892372
Alignment:
Q  295 ttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||| ||||||||||||||| ||| |||||  ||||||||||| |||||||||||    
T  14892318 ttgtctttctctctctttcataagtattgtaacattgtgattgatcaatgtcacc 14892372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 32545855 - 32545900
Alignment:
Q  304 tctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||| |||||||||| |||| ||||||| ||||||||||    
T  32545855 tctctctttcataagcattgtgacattatgattggccaatgtcacc 32545900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 7e-48; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 12343099 - 12343212
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgat 335  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12343099 ggaaaatacttgggtgacatagagttgggtgacattagtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgat 12343198  T
Q  336 tggtcaatgtcacc 349  Q
    ||| ||||||||||    
T  12343199 tggccaatgtcacc 12343212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 236 - 349
Target Start/End: Complemental strand, 10521988 - 10521875
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgat 335  Q
    ||||||||||  ||||||||||||||| ||||||||||||||||| |||| || ||||||||||||||||||||||||| |||||||||| |||||||||    
T  10521988 ggaaaatactatggtgacatagagttgagtgacattggtcaatcacaatgtcataatgcttgtgtttctctctctttcataagcattgtgacattgtgat 10521889  T
Q  336 tggtcaatgtcacc 349  Q
    ||| ||||||||||    
T  10521888 tggccaatgtcacc 10521875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 243 - 349
Target Start/End: Complemental strand, 24618733 - 24618627
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaa 342  Q
    |||||||||||||||||||||||||| |||  |||||| |||| |||||||||||||||||||||||||||| ||||||| || ||||||||||| ||||    
T  24618733 acttgggtgacatagagttgggtgacgttgaccaatcacaatgtcacaatgcttgtgtttctctctctttcataagcattatgacattgtgattgatcaa 24618634  T
Q  343 tgtcacc 349  Q
    |||||||    
T  24618633 tgtcacc 24618627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 263 - 352
Target Start/End: Complemental strand, 551277 - 551188
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||    
T  551277 ggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtggcattgtgattgaccaatgtcacccaa 551188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 31654311 - 31654385
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaa 317  Q
    |||||||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||    
T  31654311 acttgggtgatatagagttgggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaa 31654385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 243 - 352
Target Start/End: Complemental strand, 2315436 - 2315327
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaa 342  Q
    ||||| ||||||||||||| ||||||||||   ||||| ||| ||| ||||||| |||||| ||||||||||||| ||||||| ||||||||||| ||||    
T  2315436 acttgtgtgacatagagttaggtgacattgaataatcacaataccataatgcttatgtttcgctctctttcacaaacattgtgacattgtgattgatcaa 2315337  T
Q  343 tgtcacccaa 352  Q
    ||||||||||    
T  2315336 tgtcacccaa 2315327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 13043489 - 13043569
Alignment:
Q  269 attggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||  |||| |||||||||||||||||||||||||||||||||||||||  ||||||||| | ||||||||||    
T  13043489 attggtcaatcgaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgatattgtgattagccaatgtcacc 13043569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 263 - 347
Target Start/End: Original strand, 17750928 - 17751012
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtca 347  Q
    |||||||||||||||||| |||| ||||||| |||| ||| |||||||||||||||||||||| ||||||||| || ||||||||    
T  17750928 ggtgacattggtcaatcacaatgtcacaatgtttgtatttatctctctttcacaagcattgtgacattgtgatcggccaatgtca 17751012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 24587488 - 24587558
Alignment:
Q  264 gtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtga 334  Q
    ||||||||||||||||| |||| ||||||||||||||||||| || |||||||||||||||| ||||||||    
T  24587488 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctcgctttttcacaagcattgtgacattgtga 24587558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 551171 - 551227
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||    
T  551171 acttgggtggcatagagttgggtgacattggtcaatcacaatgccacaatgtttgtg 551227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 10521855 - 10521908
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgctt 296  Q
    ||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||    
T  10521855 acttgggtgacatagagtttggtgacattggccaatcacaatgtcacaatgctt 10521908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 24975741 - 24975814
Alignment:
Q  235 gggaaaatacttgggtgacatagagttg---------ggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||| ||||||||||||||||||    
T  24975741 gggaaaatacttgggtgacatagagttggctgacattggtgacattggtcaatcacaatgccacaatgcttgtg 24975814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 13043433 - 13043476
Alignment:
Q  231 aatagggaaaatacttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||| |||||||||||||| |||||||||||||||    
T  13043433 aatagggaaaatatttgggtgacatagaattgggtgacattggt 13043476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 551241 - 551277
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||| ||||||||||    
T  551241 cacaagcattgtggcattgtgattggccaatgtcacc 551277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 24618677 - 24618716
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  24618677 cacaagcattgtgacattgtgattggtcaacgtcacccaa 24618716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 31654367 - 31654328
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  31654367 cacaagcattgtgacattgtgattggccaatgtcacccaa 31654328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 24975815 - 24975778
Alignment:
Q  312 tcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  24975815 tcacaagcattgtggcattgtgattgaccaatgtcacc 24975778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 1e-46; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 234 - 349
Target Start/End: Complemental strand, 29053455 - 29053340
Alignment:
Q  234 agggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtg 333  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  29053455 agggaaaatacttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgaggcattgtg 29053356  T
Q  334 attggtcaatgtcacc 349  Q
    ||||| ||||||||||    
T  29053355 attggccaatgtcacc 29053340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 233 - 349
Target Start/End: Original strand, 11016856 - 11016981
Alignment:
Q  233 tagggaaaatacttgggtgacatagagttgggtg---------acattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattg 323  Q
    ||||||||||||||||||||||||||||||||||         ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||    
T  11016856 tagggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattg 11016955  T
Q  324 tggcattgtgattggtcaatgtcacc 349  Q
    || |||||||||||||||||||||||    
T  11016956 tgacattgtgattggtcaatgtcacc 11016981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 236 - 349
Target Start/End: Complemental strand, 34854843 - 34854721
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||||||||||||||||||||||||||||||||||         |||||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  34854843 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggtcaatcacaatgccacaatgtttgtgtttctatctctttcacaagcattgtgg 34854744  T
Q  327 cattgtgattggtcaatgtcacc 349  Q
    |||||||||||| ||||||||||    
T  34854743 cattgtgattggccaatgtcacc 34854721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 38975795 - 38975917
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacat---------tggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38975795 ggaaaatacttgggtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 38975894  T
Q  327 cattgtgattggtcaatgtcacc 349  Q
    |||| | |||| |||||||||||    
T  38975895 cattataattgatcaatgtcacc 38975917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 239 - 349
Target Start/End: Original strand, 42628297 - 42628407
Alignment:
Q  239 aaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattgg 338  Q
    ||||| ||||||||||||||||||||||||||||  |||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  42628297 aaatatttgggtgacatagagttgggtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtgattgg 42628396  T
Q  339 tcaatgtcacc 349  Q
     |||| |||||    
T  42628397 ccaatatcacc 42628407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 236 - 352
Target Start/End: Complemental strand, 41018376 - 41018251
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||| |||||||||||||||||||||||||| |     
T  41018376 ggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattggga 41018277  T
Q  327 cattgtgattggtcaatgtcacccaa 352  Q
    |||||||||||| |||||||||||||    
T  41018276 cattgtgattggccaatgtcacccaa 41018251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 245 - 349
Target Start/End: Original strand, 4649328 - 4649434
Alignment:
Q  245 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtt--tctctctctttcacaagcattgtggcattgtgattggtcaa 342  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||||||||| ||| |||||||||||  |||    
T  4649328 ttgggtgacatagagttgggtgacattggtcaatcacaatgctacaatgcttgtgtttctctctctctttcacaagcatcgtgacattgtgattgaccaa 4649427  T
Q  343 tgtcacc 349  Q
    |||||||    
T  4649428 tgtcacc 4649434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 7672025 - 7671934
Alignment:
Q  261 tgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  7672025 tgggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggctaatgtcacccaa 7671934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 238 - 349
Target Start/End: Original strand, 4290537 - 4290657
Alignment:
Q  238 aaaatacttgggtgacatagagttgggtgacattg---------gtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggca 328  Q
    |||||||||||||||||||||||||||||| ||||         |||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||    
T  4290537 aaaatacttgggtgacatagagttgggtgatattggtgatattggtcaatcacaatgccacaatgctcgtgtttctctctctttcacaagaattgtgaca 4290636  T
Q  329 ttgtgattggtcaatgtcacc 349  Q
    |||||||||| ||||||||||    
T  4290637 ttgtgattggccaatgtcacc 4290657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 263 - 349
Target Start/End: Original strand, 15027568 - 15027654
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||  |||||| ||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15027568 ggtgacattgaccaatcacaataccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 15027654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 48000769 - 48000849
Alignment:
Q  269 attggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  48000769 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacagacattgtggcattgtgattggtcaatgtcacc 48000849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 263 - 352
Target Start/End: Complemental strand, 27028905 - 27028816
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    |||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||||||| |||||||||||  |||||| ||||||    
T  27028905 ggtgacattggtcaatcacaatgtcacaatgtttgtgtttctctctctttcagaagcattgtgacattgtgattgtccaatgttacccaa 27028816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 45231996 - 45231877
Alignment:
Q  238 aaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggca 328  Q
    |||||||||||||||||||||||||||||||||||||         |||||| ||||  ||||||||| ||||||||||||||||||||     ||||||    
T  45231996 aaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgttacaatgcttttgtttctctctctttcacaa----agtggca 45231901  T
Q  329 ttgtgattggtcaatgtcacccaa 352  Q
    ||||||||||||||||||||||||    
T  45231900 ttgtgattggtcaatgtcacccaa 45231877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 264 - 349
Target Start/End: Original strand, 10419485 - 10419570
Alignment:
Q  264 gtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||||||||||  ||||| |||||||||  | ||||||||||    
T  10419485 gtgacattggtcaatcataatgttacaatacttgtgtttctctctctttcacaagttttgtgacattgtgatcagccaatgtcacc 10419570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 48000769 - 48000720
Alignment:
Q  300 tttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48000769 tttctctctctttcacaagcattgtggcattgtgattgatcaatgtcacc 48000720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 34854701 - 34854757
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  34854701 acttgggtgacatagagtttggtgacattggccaatcacaatgccacaatgcttgtg 34854757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 22764812 - 22764753
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcatt 322  Q
    ||||| ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  22764812 ggtgatattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcatt 22764753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 29053322 - 29053376
Alignment:
Q  245 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||    
T  29053322 ttgggtgacatagagtttggtgacattggccaatcacaatgcctcaatgcttgtg 29053376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 27028799 - 27028852
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgctt 296  Q
    ||||||||||||||||||||||| ||||||| |||||| |||| ||||||||||    
T  27028799 acttgggtgacatagagttgggtaacattggacaatcacaatgtcacaatgctt 27028852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 41018234 - 41018290
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||| |||||||||||||||||||||||| |||||| |||| | |||||||||||    
T  41018234 acttggatgacatagagttgggtgacattggccaatcacaatgtcccaatgcttgtg 41018290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 41945883 - 41945955
Alignment:
Q  265 tgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattg 337  Q
    ||||||| ||||||||||||| || |||| ||| |||| | |||||||||||||||||||  |||||||||||    
T  41945883 tgacattagtcaatcataatgtcataatgtttgcgtttttttctctttcacaagcattgtaacattgtgattg 41945955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 42628354 - 42628318
Alignment:
Q  316 aagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    |||||||||||||||||||||||||||||||||||||    
T  42628354 aagcattgtggcattgtgattggtcaatgtcacccaa 42628318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 48000683 - 48000722
Alignment:
Q  235 gggaaaatacttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  48000683 gggaaaatacttgggtgacattgagttgggtgacattggt 48000722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 4649448 - 4649398
Alignment:
Q  249 gtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||||||| |||||||||||||||||| |||| ||| |||||||||    
T  4649448 gtgacatagagtttggtgacattggtcaatcacaatgtcacgatgcttgtg 4649398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 45231860 - 45231906
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccac 289  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||    
T  45231860 acttgggtgacatagagttgggtgacattgaccaatcacaatgccac 45231906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 349
Target Start/End: Original strand, 41018307 - 41018340
Alignment:
Q  316 aagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||||||||||||||||||||||||||    
T  41018307 aagcattgtggcattgtgattggtcaatgtcacc 41018340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 11016931 - 11016895
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||| ||||||||||    
T  11016931 cacaagcattgtggcattgtgattggccaatgtcacc 11016895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 11017010 - 11016979
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||||    
T  11017010 acttgggtgacatagagttgggtgacattggt 11016979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 29053390 - 29053429
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  29053390 cacaaacattgtggcattgtgattggccaatgtcacccaa 29053429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 42628436 - 42628405
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||||    
T  42628436 acttgggtgacatagagttgggtgacattggt 42628405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 7671987 - 7672025
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcaccca 351  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  7671987 cacaaacattgtggcattgtgattggccaatgtcaccca 7672025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 30165379 - 30165337
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatg 285  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||    
T  30165379 acttgtgtgatatagagttgggtgacattggtcaatcacaatg 30165337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 27028754 - 27028795
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttct 304  Q
    ||||||||||| |||||| |||| ||||||||||||||||||    
T  27028754 ggtgacattggacaatcacaatgtcacaatgcttgtgtttct 27028795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 30217564 - 30217503
Alignment:
Q  265 tgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    ||||||| | |||||| |||  || |||| || |||||||||||||||||||||||||||||    
T  30217564 tgacattcgccaatcacaatatcaaaatgtttatgtttctctctctttcacaagcattgtgg 30217503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 95; Significance: 4e-46; HSPs: 3)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 238 - 352
Target Start/End: Original strand, 63758 - 63872
Alignment:
Q  238 aaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattg 337  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  63758 aaaatacttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattg 63857  T
Q  338 gtcaatgtcacccaa 352  Q
    | |||||||||||||    
T  63858 gccaatgtcacccaa 63872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 63885 - 63833
Alignment:
Q  247 gggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||| |||||||||||||||||||| |||||| |||| |||||||||||||    
T  63885 gggtgatatagagttgggtgacattggccaatcacaatgtcacaatgcttgtg 63833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 63819 - 63780
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  63819 cacaaacattgtggcattgtgattggccaatgtcacccaa 63780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 88; Significance: 6e-42; HSPs: 3)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 236 - 347
Target Start/End: Complemental strand, 49842 - 49731
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgat 335  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  49842 ggaaaatacttcggtgacatagagttaggtgacattggccaatcacaatgccacaatgcttgtgtttctctttctttcacaagcattgtgacattgtgat 49743  T
Q  336 tggtcaatgtca 347  Q
    ||||||||||||    
T  49742 tggtcaatgtca 49731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 49779 - 49815
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||| ||||||||||    
T  49779 cacaagcattgtggcattgtgattggccaatgtcacc 49815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 272
Target Start/End: Original strand, 49700 - 49729
Alignment:
Q  243 acttgggtgacatagagttgggtgacattg 272  Q
    ||||||||||||||||||||||||||||||    
T  49700 acttgggtgacatagagttgggtgacattg 49729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 6e-39; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 5033151 - 5033273
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  5033151 ggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 5033250  T
Q  327 cattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||    
T  5033251 cattgtgattggtcaatgtcacc 5033273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 235 - 348
Target Start/End: Complemental strand, 8243537 - 8243415
Alignment:
Q  235 gggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtg 325  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8243537 gggaaaatacttgggtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 8243438  T
Q  326 gcattgtgattggtcaatgtcac 348  Q
    |||||||||||| ||||||||||    
T  8243437 gcattgtgattgatcaatgtcac 8243415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 237 - 349
Target Start/End: Complemental strand, 35441116 - 35440995
Alignment:
Q  237 gaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggc 327  Q
    ||||||||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  35441116 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgac 35441017  T
Q  328 attgtgattggtcaatgtcacc 349  Q
    ||||||||||||||||||||||    
T  35441016 attgtgattggtcaatgtcacc 35440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 235 - 349
Target Start/End: Complemental strand, 33841740 - 33841617
Alignment:
Q  235 gggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtg 325  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33841740 gggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 33841641  T
Q  326 gcattgtgattggtcaatgtcacc 349  Q
     || ||||||||||||||||||||    
T  33841640 acaatgtgattggtcaatgtcacc 33841617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 39850954 - 39851067
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgat 335  Q
    ||||||||||| ||| | |||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| |   ||||||||    
T  39850954 ggaaaatacttaggtaatatagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattataatattgtgat 39851053  T
Q  336 tggtcaatgtcacc 349  Q
    ||||||||||||||    
T  39851054 tggtcaatgtcacc 39851067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 236 - 352
Target Start/End: Complemental strand, 34541941 - 34541826
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgat 335  Q
    ||||||||||||| ||| ||||||||| |||||||||  | | || ||||||||||||||||||||||||||||||||||||||||||||  ||| ||||    
T  34541941 ggaaaatacttgg-tgatatagagttgagtgacattgacctagcaaaatgccacaatgcttgtgtttctctctctttcacaagcattgtgatattatgat 34541843  T
Q  336 tggtcaatgtcacccaa 352  Q
    ||| |||||||||||||    
T  34541842 tggccaatgtcacccaa 34541826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 264 - 349
Target Start/End: Original strand, 8796449 - 8796534
Alignment:
Q  264 gtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||| |||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||    
T  8796449 gtgatattggtcaatcacaatgtcacaatgcttgtgtttctctatctttcacaagcattgtgacattttgattggtcaatgtcacc 8796534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 264 - 349
Target Start/End: Original strand, 10086784 - 10086869
Alignment:
Q  264 gtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||||||||| |||| || |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  10086784 gtgacattggtcaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgtgattggtcaatgtcacc 10086869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 263 - 349
Target Start/End: Original strand, 5667123 - 5667209
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| || |||||| ||||| ||||||||||    
T  5667123 ggtgacattggtcaatcacaatgtcacaatgcttgtatttctctctctttcacaagcattatgacattgtaattggccaatgtcacc 5667209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 6296611 - 6296698
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcatt 330  Q
    |||||| |||||||||||||||||||||||  |||||| |||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  6296611 acttggatgacatagagttgggtgacattgaccaatcacaatgtcataatgcttgtgtttctctctctttcacaagtattgtgacatt 6296698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 234 - 349
Target Start/End: Complemental strand, 45191277 - 45191153
Alignment:
Q  234 agggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgt 324  Q
    |||| ||||||||||||||||||||||||| ||| ||||||         |||||| ||||  |||||| |||||||||||||||||||| |||||||||    
T  45191277 aggggaaatacttgggtgacatagagttggatgatattggtgacattgaccaatcaaaatgttacaatgtttgtgtttctctctctttcataagcattgt 45191178  T
Q  325 ggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||||  |||||||||||    
T  45191177 ggcattgtgattaatcaatgtcacc 45191153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 264 - 349
Target Start/End: Original strand, 34229668 - 34229753
Alignment:
Q  264 gtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||  |||||||| |||| || ||||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||||    
T  34229668 gtgacatgagtcaatcacaatgtcagaatgcttgtgtttctctctctttcacaagcattgtgatattgtgattgaccaatgtcacc 34229753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 265 - 348
Target Start/End: Original strand, 4958627 - 4958709
Alignment:
Q  265 tgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcac 348  Q
    ||||||||| |||||| |||| || |||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||    
T  4958627 tgacattggccaatcacaatgtcataatgtttgtgtttctctctctttcacaagtattgtgac-ttgtgattggtcaatgtcac 4958709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 8243394 - 8243450
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  8243394 acttgggtgacatagagttgagtgacattgatcaatcacaatgccacaatgcttgtg 8243450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 34541809 - 34541865
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||||||||||| |||||||||||||||| ||||||||||  |||||||||||||    
T  34541809 acttgggtgacataaagttgggtgacattggccaatcataatatcacaatgcttgtg 34541865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 35031689 - 35031640
Alignment:
Q  300 tttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||||||    
T  35031689 tttctctctctttcacaagcattgcgacattgtgattgatcaatgtcacc 35031640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 2581815 - 2581895
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctc 307  Q
    ||||||||||||||||||||||| ||||||||||||| |         |||||| ||||||||||||||||||||||||||    
T  2581815 ggaaaatacttgggtgacatagaattgggtgacattgttgacattggccaatcacaatgccacaatgcttgtgtttctctc 2581895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 5033223 - 5033187
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||||||||||||||    
T  5033223 cacaagcattgtggcattgtgattggtcaatgtcacc 5033187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 34229773 - 34229717
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||| ||||||||||||| |||||||||||||||||| |||  |||||||||||||    
T  34229773 acttgtgtgacatagagttaggtgacattggtcaatcacaatatcacaatgcttgtg 34229717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 298 - 349
Target Start/End: Original strand, 31159912 - 31159963
Alignment:
Q  298 tgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||||| |||| |||||||  |||||||||    
T  31159912 tgtttctctctctttcacaagcattgtgacattatgattggcgaatgtcacc 31159963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 22649835 - 22649873
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  22649835 ggaaaatacttgggtgacatagagttgagtgacattggt 22649873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 33841667 - 33841703
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||| ||||||||||||||||||    
T  33841667 cacaagcattgtggcattctgattggtcaatgtcacc 33841703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 35441045 - 35441081
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||||||| ||||||||||    
T  35441045 cacaagcattgtggcattgtgattggccaatgtcacc 35441081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 5033302 - 5033271
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||||    
T  5033302 acttgggtgacatagagttgggtgacattggt 5033271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 6296667 - 6296628
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  6296667 cacaagcattatgacattgtgattggtcaatgtcacccaa 6296628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 274
Target Start/End: Original strand, 33841588 - 33841619
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||||    
T  33841588 acttgggtgacatagagttgggtgacattggt 33841619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 39851017 - 39850978
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  39851017 cacaaacattgtggcattgtgattggccaatgtcacccaa 39850978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 43844581 - 43844534
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctct 310  Q
    ||||| |||| ||||||| |||| ||||||||||||||||||||||||    
T  43844581 ggtgatattgatcaatcacaatgtcacaatgcttgtgtttctctctct 43844534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 2581887 - 2581853
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtca 347  Q
    |||||||||||||||||||||||||| ||||||||    
T  2581887 cacaagcattgtggcattgtgattggccaatgtca 2581853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 5667245 - 5667207
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggt 274  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  5667245 ggaaaatacttgggtgacatagagtttgatgacattggt 5667207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 10086748 - 10086782
Alignment:
Q  237 gaaaatacttgggtgacatagagttgggtgacatt 271  Q
    |||||||||||||||||||||| ||||||||||||    
T  10086748 gaaaatacttgggtgacatagaattgggtgacatt 10086782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 37618802 - 37618753
Alignment:
Q  300 tttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||| | ||||| |||||| |||||||||||| ||||||||||    
T  37618802 tttctctctctcttacaaggattgtgacattgtgattggccaatgtcacc 37618753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 39139891 - 39139838
Alignment:
Q  245 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgt 298  Q
    |||||||||||||  || |||||||||||||||||| |||| |||||| |||||    
T  39139891 ttgggtgacatagtatttggtgacattggtcaatcacaatgtcacaatccttgt 39139838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 255 - 349
Target Start/End: Complemental strand, 1801566 - 1801472
Alignment:
Q  255 tagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1801566 tagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggccaatgtcacc 1801472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 243 - 349
Target Start/End: Complemental strand, 47677387 - 47677281
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaa 342  Q
    ||||| |||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  47677387 acttgtgtgacatagagttgggtgacattgatcaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgatcggtcaa 47677288  T
Q  343 tgtcacc 349  Q
    |||||||    
T  47677287 tgtcacc 47677281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 245 - 349
Target Start/End: Complemental strand, 30476604 - 30476500
Alignment:
Q  245 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatg 344  Q
    ||||| || ||||||||  ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  30476604 ttgggggatatagagttatgtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatg 30476505  T
Q  345 tcacc 349  Q
    |||||    
T  30476504 tcacc 30476500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 41752954 - 41753076
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtg---------acattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||||||||||||||||||||||||||         ||||||| |||||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  41752954 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctttctctttcacaagcattgtgg 41753053  T
Q  327 cattgtgattggtcaatgtcacc 349  Q
    |||||||||||| ||||||||||    
T  41753054 cattgtgattggccaatgtcacc 41753076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 233 - 352
Target Start/End: Original strand, 33689163 - 33689291
Alignment:
Q  233 tagggaaaatacttgggtgacatagagttgggtgacattg---------gtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattg 323  Q
    |||||| || ||||| ||||||||||||||||||||||||         |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  33689163 tagggataacacttgtgtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattg 33689262  T
Q  324 tggcattgtgattggtcaatgtcacccaa 352  Q
    || |||||||||||| |||||||||||||    
T  33689263 tgacattgtgattggccaatgtcacccaa 33689291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 235 - 349
Target Start/End: Complemental strand, 47492196 - 47492073
Alignment:
Q  235 gggaaaatacttgggtgacatagagttgggtgacattggtca---------atcataatgccacaatgcttgtgtttctctctctttcacaagcattgtg 325  Q
    ||||||||| ||||||||||||||||||||||||||||||||         |||| |||| |||||||||||||||||||||| ||||||||||||||||    
T  47492196 gggaaaatagttgggtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtg 47492097  T
Q  326 gcattgtgattggtcaatgtcacc 349  Q
     |||||||||||| ||||||||||    
T  47492096 acattgtgattggccaatgtcacc 47492073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 234 - 352
Target Start/End: Complemental strand, 43139859 - 43139732
Alignment:
Q  234 agggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgt 324  Q
    |||||||||| ||||||||||||||||||||||||||||||         |||| | ||||||||||||||||||||||||||||||||||||||||| |    
T  43139859 agggaaaatatttgggtgacatagagttgggtgacattggtgacattggccaataacaatgccacaatgcttgtgtttctctctctttcacaagcattct 43139760  T
Q  325 ggcattgtgattggtcaatgtcacccaa 352  Q
    | |||||||||||  | |||||||||||    
T  43139759 gacattgtgattgaccgatgtcacccaa 43139732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 243 - 337
Target Start/End: Complemental strand, 29031846 - 29031752
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattg 337  Q
    ||||| ||||||||||||| ||||| |||||||||| | |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  29031846 acttgtgtgacatagagttaggtgatattggtcaattacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattg 29031752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 236 - 349
Target Start/End: Complemental strand, 51046221 - 51046099
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 326  Q
    |||||||||||||||||||||||||||| ||||||||||         |||||| ||||||| |||||||||||||||||||||||||||| |||||||     
T  51046221 ggaaaatacttgggtgacatagagttggatgacattggtgacattggccaatcacaatgccataatgcttgtgtttctctctctttcacaaacattgtga 51046122  T
Q  327 cattgtgattggtcaatgtcacc 349  Q
    |||| |||||| |||||||||||    
T  51046121 cattatgattgatcaatgtcacc 51046099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 1801634 - 1801566
Alignment:
Q  236 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttct 304  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||    
T  1801634 ggaaaatacttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttct 1801566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 263 - 347
Target Start/End: Complemental strand, 30734514 - 30734430
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtca 347  Q
    ||||||||||| |||||| |||| || ||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||    
T  30734514 ggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtgacattgtgatcggtcaatgtca 30734430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 30580867 - 30580782
Alignment:
Q  264 gtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||||||||||||||| |||| |||| ||||||||||||| ||||||||||||  |||||| |||| |||||||||||| |||||    
T  30580867 gtgacattggtcaatcacaatgtcacagtgcttgtgtttctatctctttcacaaatattgtgacattatgattggtcaatatcacc 30580782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 49418806 - 49418714
Alignment:
Q  260 ttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||||||||||| |||||  || ||||||||||||||||||||||||||||  ||| || |||||||||||  |||| ||||||||    
T  49418806 ttgggtgacattggtcaattataatatcataatgcttgtgtttctctctctttcacaaatattatgacattgtgattgaccaatatcacccaa 49418714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 263 - 355
Target Start/End: Original strand, 50550001 - 50550093
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaagtg 355  Q
    ||||||||||  |||||| |||   |||||||||||||||||||||||||||||| |||| || |||| |||||| |||||||||||||||||    
T  50550001 ggtgacattgaccaatcacaatattacaatgcttgtgtttctctctctttcacaaacattatgacattatgattgatcaatgtcacccaagtg 50550093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 263 - 352
Target Start/End: Original strand, 18321677 - 18321766
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    |||||||||||||||||| |||| ||||| | |||||||| ||||| ||||||| |||||||| |||||||||||  |||||||| ||||    
T  18321677 ggtgacattggtcaatcacaatgtcacaaagtttgtgtttttctctttttcacatgcattgtgacattgtgattgaccaatgtcatccaa 18321766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 50524730 - 50524802
Alignment:
Q  265 tgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattg 337  Q
    ||||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||| ||  |||||||||||    
T  50524730 tgacattgaccaatcataatgtcacaatgtttgtgtttctctctctttcacaagcatcgtaacattgtgattg 50524802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 33689308 - 33689252
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||    
T  33689308 acttgggtgacattgagttgggtgacattggccaatcacaatgtcacaatgcttgtg 33689252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 55223364 - 55223308
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||||||||||||||||  |||| ||||||||||||||||| |||||||||||||    
T  55223364 acttgggtgacatagagttaagtgatattggtcaatcataatgtcacaatgcttgtg 55223308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 250 - 317
Target Start/End: Complemental strand, 39385813 - 39385746
Alignment:
Q  250 tgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaa 317  Q
    |||||||||||||||||||||||| |||||| ||||  |||||  |||| ||||||||||||||||||    
T  39385813 tgacatagagttgggtgacattggccaatcacaatgttacaatatttgtatttctctctctttcacaa 39385746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 18321783 - 18321727
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||| |||||||||||||| |||||||||||||||| |||| |||||||| ||||    
T  18321783 acttggatgacatagagttggatgacattggtcaatcacaatgtcacaatgcatgtg 18321727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 43139715 - 43139771
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||| |||||||||||||||||||||| ||||||||| |||| || ||||||||||    
T  43139715 acttgagtgacatagagttgggtgacatcggtcaatcacaatgtcagaatgcttgtg 43139771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 1272499 - 1272557
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtt 301  Q
    |||| |||||||||||||| ||||||||||| |||||| | || |||||||||||||||    
T  1272499 acttaggtgacatagagtttggtgacattggccaatcaaattgtcacaatgcttgtgtt 1272557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 49414555 - 49414505
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatg 293  Q
    ||||||||||||||||||||||||||||||| |||| | |||| |||||||    
T  49414555 acttgggtgacatagagttgggtgacattggccaattacaatgtcacaatg 49414505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 49418697 - 49418739
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatg 285  Q
    ||||||||||||||||||||||||| |||||||||||| ||||    
T  49418697 acttgggtgacatagagttgggtgatattggtcaatcacaatg 49418739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 55223258 - 55223332
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattg 337  Q
    ||||| |||||||||||| |||   | ||| ||| |||||||||||||||||||||||||||| |||| ||||||    
T  55223258 ggtgatattggtcaatcacaatattagaatacttatgtttctctctctttcacaagcattgtgacattatgattg 55223332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 29031727 - 29031776
Alignment:
Q  250 tgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    |||||||||||| ||||| |||||||||||| |||| |||||||||||||    
T  29031727 tgacatagagttaggtgatattggtcaatcacaatgtcacaatgcttgtg 29031776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 45103180 - 45103135
Alignment:
Q  304 tctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||||    
T  45103180 tctctctttcacaagcattgtgacattgtgattgatcaatatcacc 45103135  T

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Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 1272590 - 1272559
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||||    
T  1272590 acttgggtgacatagagttgggtgacattggt 1272559  T

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Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 274
Target Start/End: Original strand, 1801443 - 1801474
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||||    
T  1801443 acttgggtgacatagagttgggtgacattggt 1801474  T

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Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 1801522 - 1801561
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  1801522 cacaaacattgtggcattgtgattggccaatgtcacccaa 1801561  T

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Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 1801571 - 1801610
Alignment:
Q  313 cacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  1801571 cacaaacattgtggcattgtgattggccaatgtcacccaa 1801610  T

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Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 274
Target Start/End: Original strand, 45103106 - 45103137
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggt 274  Q
    ||||||||||||||||||||||||||||||||    
T  45103106 acttgggtgacatagagttgggtgacattggt 45103137  T

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Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 30904289 - 30904354
Alignment:
Q  282 aatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtca 347  Q
    |||| |||||||||||||||||||||||||| | ||  ||||||  |||||||||| | |||||||    
T  30904289 aatgtcacaatgcttgtgtttctctctcttttataaatattgtgatattgtgattgattaatgtca 30904354  T

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Target: scaffold0161 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 233 - 348
Target Start/End: Complemental strand, 27371 - 27247
Alignment:
Q  233 tagggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctctctctttcacaagcattg 323  Q
    |||||||||||||||||||| |||||||||||||||||||||         |||||| ||||||||||||||| ||||||||||||||||||||| |||     
T  27371 tagggaaaatacttgggtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttctgtttctctctctttcacaagaatta 27272  T
Q  324 tggcattgtgattggtcaatgtcac 348  Q
    || |||||||||||| |||| ||||    
T  27271 tgacattgtgattggccaatatcac 27247  T

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Target: scaffold0586 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 7159 - 7084
Alignment:
Q  263 ggtgacattggtcaatcataatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattgg 338  Q
    ||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7159 ggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 7084  T

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Target: scaffold1033 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 2265 - 2328
Alignment:
Q  289 caatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcgcccaa 2328  T

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Target: scaffold1033; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 2345 - 2289
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||| |||||||||| ||||| ||||||| ||||||| |||| |||||||||||||    
T  2345 acttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtg 2289  T

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Target: scaffold1029 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 2265 - 2328
Alignment:
Q  289 caatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcgcccaa 2328  T

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Target: scaffold1029; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 2345 - 2289
Alignment:
Q  243 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 299  Q
    ||||| |||||||||| ||||| ||||||| ||||||| |||| |||||||||||||    
T  2345 acttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtg 2289  T

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Target: scaffold0481 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 288 - 352
Target Start/End: Complemental strand, 2974 - 2910
Alignment:
Q  288 acaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacccaa 352  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  2974 acaatgtttgtgtttctctctctttcacaaacattgtgacattgtgattggtcaatatcacccaa 2910  T

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Target: scaffold0180 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 19207 - 19154
Alignment:
Q  290 aatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaat 343  Q
    |||| |||||||||||| |||| ||||||||||||| ||||||||||| |||||    
T  19207 aatgtttgtgtttctctttcttccacaagcattgtgacattgtgattgatcaat 19154  T

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Target: scaffold0536 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 349
Target Start/End: Complemental strand, 4969 - 4918
Alignment:
Q  298 tgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 349  Q
    ||||| |||||||||||||||||||||   ||||||||||||| ||||||||    
T  4969 tgtttgtctctctttcacaagcattgtaatattgtgattggtcgatgtcacc 4918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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