View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11945_low_7 (Length: 369)
Name: NF11945_low_7
Description: NF11945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11945_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 29876148 - 29875814
Alignment:
| Q |
15 |
cataggttatgactaatgggaggttcaaaagtgtgagacatagagttttggcaaatgggatcaatccaaggctctcaatgatttactttggtggaccacc |
114 |
Q |
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| T |
29876148 |
cataggttatgactaatgggaggttcaaaagtgtgagacatagagttttggcaaatggtatcaatccaaggctctcaatgatttactttggtggaccacc |
29876049 |
T |
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| Q |
115 |
tttgagtgagaaaatagcaccattgccttcactcatgaaaggaaatgaaagcttgtacaaagaatttacatggtttgagtacaagaattctacttatgga |
214 |
Q |
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| T |
29876048 |
tttgagtgagaaaatagcaccattgccttcactcatgaaaggaaatgaaagcttgtacaaagaatttacatggtttgagtacaagaattctacttatgga |
29875949 |
T |
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| Q |
215 |
acaagattggctgacaataggttgggaaattatgaaaggattgctgcctcctaatacaagagggttgtagtgtgtgg-ttcacttgtcaatataaataag |
313 |
Q |
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| T |
29875948 |
acaagattggctgacaataggctgggaaattatgaaaggattgctgcctcctaatacaagagggttgtagtgtgtggtttcacttgtcaatacaaataag |
29875849 |
T |
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| Q |
314 |
gggatacaatacatacactataattatcataaagg |
348 |
Q |
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| T |
29875848 |
gggatacaatacatacactataattatcataaagg |
29875814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 21572864 - 21573084
Alignment:
| Q |
18 |
aggttatgactaatgggaggttcaaaagtgtgagacatagagttttggcaaatgggatcaatccaaggctctcaatgatttactttggtggaccaccttt |
117 |
Q |
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| T |
21572864 |
aggttatgactaatggacgattcaagagtgtgaggcacagagttttagcaaatgggttcaaatctagactctccatgatttattttggtggtccatcttt |
21572963 |
T |
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| Q |
118 |
gagtgagaaaatagcaccattgccttcactcatgaaaggaaatgaaagc---ttgtacaaagaatttacatggtttgagtacaagaattctacttatgga |
214 |
Q |
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| T |
21572964 |
gaatgagaaaattgcacctttgccttgtctcataaaaggaaatgaatgcttattatatagagagtttacatggtttgaatacaagaaatcagcttatgct |
21573063 |
T |
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| Q |
215 |
acaagattggctgacaatagg |
235 |
Q |
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|||||||| | ||||||||| |
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| T |
21573064 |
acaagattatcagacaatagg |
21573084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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