View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11945_low_8 (Length: 369)
Name: NF11945_low_8
Description: NF11945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11945_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 1898935 - 1899287
Alignment:
| Q |
1 |
ccacataatcaattgggtgttcctaagtgcattcaattggtagacatagcgagaaatgggagacataaaaggaggttgacggtaggccaggactcgagag |
100 |
Q |
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| T |
1898935 |
ccacataatcaattgggtgtttctaagtgcattcaattggtagacatagcgagaaatgggagatataaaaggaggttgacggcaggccaggactcgagag |
1899034 |
T |
|
| Q |
101 |
aggactagaataaataaatggaatgcactttctggaggttgacggcaggccaggactcacgaggattggaagctatcacgcaaatgcaaagtagatacaa |
200 |
Q |
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| T |
1899035 |
aggactagtataaataaatggaatgcactttctggaggttgacggcaggccaggactcacaaggattggaagatatcacgcaaacgaaaagtagatacaa |
1899134 |
T |
|
| Q |
201 |
ttcaagaaacgaaattggaagttgtcacgccggctctttgctatagtttatggaggagcgaagataatagtggcggaattatatatatttatggaataaa |
300 |
Q |
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| T |
1899135 |
ttcaagaaacgaaattggaagttgtcacgccggctctttgctatagtttatggaggagcgaagataatagtggcggaat--tatatatttatggaataaa |
1899232 |
T |
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| Q |
301 |
gtcgattctggtctttctttcacttttggggggaaggttatgtggatattttttg |
355 |
Q |
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| T |
1899233 |
gtcgattctagtctttctttcacttttggggggaaggttatgtcgatattttttg |
1899287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 1908381 - 1908733
Alignment:
| Q |
1 |
ccacataatcaattgggtgttcctaagtgcattcaattggtagacatagcgagaaatgggagacataaaaggaggttgacggtaggccaggactcgagag |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
1908381 |
ccacataatcaattgggtgtttctaagtgcattcaattggtagacatagcgagaaatgggagatataaaaggaggttgacggcaggccaggactcgagag |
1908480 |
T |
|
| Q |
101 |
aggactagaataaataaatggaatgcactttctggaggttgacggcaggccaggactcacgaggattggaagctatcacgcaaatgcaaagtagatacaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | ||||||||||||| |
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| T |
1908481 |
aggactagtataaataaatggaatgcactttctggaggttgacggcaggccaggactcacaaggattggaagatatcacgcaaacgaaaagtagatacaa |
1908580 |
T |
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| Q |
201 |
ttcaagaaacgaaattggaagttgtcacgccggctctttgctatagtttatggaggagcgaagataatagtggcggaattatatatatttatggaataaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1908581 |
ttcaagaaacgaaattggaagttgtcacgccggctctttgctatagtttatggaggagcgaagataatagtggcggaat--tatatatttatggaataaa |
1908678 |
T |
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| Q |
301 |
gtcgattctggtctttctttcacttttggggggaaggttatgtggatattttttg |
355 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1908679 |
gtcgattctagtctttctttcacttttggggggaaggttatgtcgatattttttg |
1908733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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