View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11946_high_14 (Length: 238)

Name: NF11946_high_14
Description: NF11946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11946_high_14
NF11946_high_14
[»] chr8 (9 HSPs)
chr8 (17-217)||(2028012-2028212)
chr8 (17-217)||(1950784-1950984)
chr8 (17-198)||(2053814-2053995)
chr8 (17-217)||(2032548-2032748)
chr8 (17-197)||(2049809-2049989)
chr8 (17-217)||(10767186-10767387)
chr8 (17-197)||(2036623-2036803)
chr8 (17-197)||(2046000-2046180)
chr8 (97-144)||(2021932-2021979)
[»] chr4 (1 HSPs)
chr4 (32-221)||(48909060-48909249)
[»] chr2 (3 HSPs)
chr2 (99-144)||(28713715-28713760)
chr2 (99-144)||(28743615-28743660)
chr2 (99-144)||(28736989-28737034)
[»] chr1 (6 HSPs)
chr1 (94-143)||(16419767-16419816)
chr1 (94-137)||(16443101-16443144)
chr1 (94-149)||(16499340-16499395)
chr1 (94-143)||(16416588-16416637)
chr1 (94-143)||(16427507-16427556)
chr1 (94-143)||(16438211-16438260)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 2028212 - 2028012
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  2028212 gaataacatggcttgtgttgtaggctatctcatatttgtcaggttgatgatggaataaacttggtatcttctcaactcctccatcaacaagtccttttac 2028113  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccatttcccttttgtttgtagtg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2028112 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtagttcccatttcccttttgtttgtagtg 2028013  T
Q  217 g 217  Q
    |    
T  2028012 g 2028012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 1950784 - 1950984
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  1950784 gaataacatggcttgtgttgtaggctatctcatatttgtcaggttgatgatggaataaacttggtatcttctcaactcctccatcaacaagtccttttac 1950883  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccatttcccttttgtttgtagtg 216  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1950884 accagcttttgtttcatcaaatgctttacgttcattgaatgtagaatcaaggttaggcttggttgtattagtggttcccatttcacttttgtttgtagtg 1950983  T
Q  217 g 217  Q
    |    
T  1950984 g 1950984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 2053995 - 2053814
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2053995 gaataacattgcttgtattgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 2053896  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccatt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  2053895 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtatcaatggttcccatt 2053814  T

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Target: chr8; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 2032748 - 2032548
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    ||||| |||||||  ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  2032748 gaatagcatggctcatgttgttggctttctcatatttgtcaggttgatgatggaataagcttggtatcttcttaagtcctgcatcaacaagtccttttac 2032649  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccatttcccttttgtttgtagtg 216  Q
    |||||||||||||||||||||| ||||||||||| | ||| | |||||||||||||||||||||||    |||||||||||||  ||| |||||||||||    
T  2032648 accagcttttgtttcatcaaattctttgcgttcactcaatatagaatcaaggttaggcttggttgtgcctgtggttcccatttttcttatgtttgtagtg 2032549  T
Q  217 g 217  Q
    |    
T  2032548 g 2032548  T

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Target: chr8; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 2049989 - 2049809
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  2049989 gaataacatggcttgtgttgttggcttcctcatatttgtctggttgatgatggaataaggttggtatcttcttaactcctgcatcaacaagtccttttac 2049890  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccat 197  Q
    ||| ||||||||||||||||||||| |||| ||| | ||| | ||||||| ||||||||||||||||| | ||||||||||    
T  2049889 acctgcttttgtttcatcaaatgctatgcgctcactcaatatagaatcaaagttaggcttggttgtatcaatggttcccat 2049809  T

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Target: chr8; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 10767387 - 10767186
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    ||||||||||||||||||||| ||||| ||||||||| || |||||||||||||||||| | || ||||| | || |||| |||||||||||||||||||    
T  10767387 gaataacatggcttgtgttgtaggctaactcatatttatcaggttgatgatggaataaggtagggatcttgttaagtcctccatcaacaagtccttttac 10767288  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccatttcccttt-tgtttgtagt 215  Q
    |||||||||||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||| ||||||||||||||  |||| ||||||||||    
T  10767287 accagcttttgtttcatcaaatgctttgcgttcattcaataaagaatcaaggttaggcttggttgtatcagtggttcccatttttctttctgtttgtagt 10767188  T
Q  216 gg 217  Q
    ||    
T  10767187 gg 10767186  T

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Target: chr8; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 2036803 - 2036623
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||||  ||||||||     |||||| ||| || |||| |||||||||||||||| ||    
T  2036803 gaataacatggcttgtgttgttggctttctcgtatttgtcaggttgacaatggaatatctcaggtatcctcttaagtcctccatcaacaagtcctttcac 2036704  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccat 197  Q
    ||||| |||||||||||||||||||||||||||||| | |   ||||||||||||||| |||||| || | ||||||||||    
T  2036703 accagattttgtttcatcaaatgctttgcgttcattcattacagaatcaaggttaggcatggttgcatcaatggttcccat 2036623  T

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Target: chr8; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 2046180 - 2046000
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    |||||||||||||||||||||||||| |||  |||||||| ||||||  ||||||||     |||||| ||| || |||| |||||||||||||||| ||    
T  2046180 gaataacatggcttgtgttgttggctttctggtatttgtcaggttgacaatggaatatctcaggtatcctcttaagtcctccatcaacaagtcctttcac 2046081  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccat 197  Q
    ||||| |||||||||||||||||||||||||||||| | |   ||||||||||||||| |||||| || | ||||||||||    
T  2046080 accagattttgtttcatcaaatgctttgcgttcattcattacagaatcaaggttaggcatggttgcatcaatggttcccat 2046000  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 2021979 - 2021932
Alignment:
Q  97 gcatcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 144  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||    
T  2021979 gcatcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 2021932  T

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Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 32 - 221
Target Start/End: Original strand, 48909060 - 48909249
Alignment:
Q  32 tgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttacaccagcttttgtttc 131  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||  ||| ||||||||| ||||||||||| ||||||||||||    
T  48909060 tgttgtaggctatctcatttttgtctggttgatgatggaaaaagcttgggatcttcttaataccttcatcaacaaatccttttacactagcttttgtttc 48909159  T
Q  132 atcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccatttcccttttgtttgtagtggctct 221  Q
    ||||||||||||||||||| | ||| | ||||||| |||||||||||||||||  |||||||||||||  ||| | |||| |||||||||    
T  48909160 atcaaatgctttgcgttcactcaatatagaatcaaagttaggcttggttgtatccgtggttcccatttttcttatttttgcagtggctct 48909249  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 28713715 - 28713760
Alignment:
Q  99 atcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 144  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  28713715 atcaacaaggcctttaacaccagcttttgtttcatcaaatgctttg 28713760  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 28743615 - 28743660
Alignment:
Q  99 atcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 144  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  28743615 atcaacaaggcctttaacaccagcttttgtttcatcaaatgctttg 28743660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 28736989 - 28737034
Alignment:
Q  99 atcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 144  Q
    ||||||||| ||||| |||||||||||| |||||||||||||||||    
T  28736989 atcaacaaggcctttaacaccagcttttctttcatcaaatgctttg 28737034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 16419767 - 16419816
Alignment:
Q  94 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 143  Q
    |||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  16419767 cctgcatcaacaagtccttttacaccaaattttgtttcatcaaaagcttt 16419816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 16443101 - 16443144
Alignment:
Q  94 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaa 137  Q
    |||||||||||||||||||| ||||||  |||||||||||||||    
T  16443101 cctgcatcaacaagtcctttaacaccaagttttgtttcatcaaa 16443144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 16499395 - 16499340
Alignment:
Q  94 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaatgctttgcgttc 149  Q
    |||||||||||||||||||| ||||||  |||||| |||||||| |||||| ||||    
T  16499395 cctgcatcaacaagtcctttaacaccaagttttgtatcatcaaaagctttgagttc 16499340  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 16416588 - 16416637
Alignment:
Q  94 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 143  Q
    |||||||| ||||||||||| ||||||  ||||||||||||||| |||||    
T  16416588 cctgcatcgacaagtcctttaacaccaagttttgtttcatcaaaagcttt 16416637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 16427507 - 16427556
Alignment:
Q  94 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 143  Q
    |||||||||||||||||| | ||||||  ||||||||||||||| |||||    
T  16427507 cctgcatcaacaagtcctctaacaccaagttttgtttcatcaaaagcttt 16427556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 16438260 - 16438211
Alignment:
Q  94 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 143  Q
    |||||||||||||||||||| |||||   ||||||||||||||| |||||    
T  16438260 cctgcatcaacaagtcctttaacacccaattttgtttcatcaaaagcttt 16438211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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