View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11946_high_17 (Length: 202)
Name: NF11946_high_17
Description: NF11946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11946_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 2046060 - 2046233
Alignment:
| Q |
11 |
aggagcagagatacgatcactcatacgtacgcgtcttttcgctgttatacttcatattaacacacaagtttgttagagtacaattacttgaactagaaat |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| |
|
|
| T |
2046060 |
aggagcagaaatacgatcactcatacgtacgcatcttttcgctgttatacttcatattaacac--aagtttgttagactacatttacttgaactagaaat |
2046157 |
T |
|
| Q |
111 |
taattggataagattgagttagttagagactgatcatatagttaccacagttagtagcataaccatctctacatac |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2046158 |
taattggataagattgagttagttagagactgatcacatagttaccacagttagtagcataaccatctctacatac |
2046233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 23509223 - 23509286
Alignment:
| Q |
72 |
acacaagtttgttagagtacaattacttgaactagaaattaattggataagattgagttagtta |
135 |
Q |
| |
|
|||||| |||| |||||| |||||| |||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
23509223 |
acacaaatttgctagagtttaattacgtgaactagaagttagttggataagattgagttagtta |
23509286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 35987850 - 35987789
Alignment:
| Q |
73 |
cacaagtttgttagagtacaattacttgaactagaaattaattggataagattgagttagtt |
134 |
Q |
| |
|
|||||||||||||||| | ||| |||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
35987850 |
cacaagtttgttagaggttagttatttgagctagaagttaattgaataagattgagttagtt |
35987789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University