View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11946_high_9 (Length: 270)
Name: NF11946_high_9
Description: NF11946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11946_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 39400195 - 39400431
Alignment:
| Q |
14 |
gatgaagaatacatagcatttattataaacaggggtaaatcaatgtttcaacattataacaataatacacacatttattagctctaactaactaataaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39400195 |
gatgaagaatacatagcatttattataaacaggggtaaatcaatgtttcaacattataacaataatacacacatttattagctctaactaactaataaat |
39400294 |
T |
|
| Q |
114 |
catgaagtaatgaatagattacagtttgagaaacaaaatatatgattgaactatgaaaactgaatcatgaagtaatgtataaaaaatgagaatgaagttt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39400295 |
catgaagtaatgaatagattacagtttgagaaacaaaatatatgattgaactatgaaaactgaatcatgaagtaatgtataaaaaatgagaatgaagttt |
39400394 |
T |
|
| Q |
214 |
agaagcttacaatacaaaaagtggttgatgatattat |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39400395 |
agaagcttacaatacaaaaagtggttgatgatattat |
39400431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University