View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11946_low_1 (Length: 692)

Name: NF11946_low_1
Description: NF11946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11946_low_1
NF11946_low_1
[»] chr4 (3 HSPs)
chr4 (21-333)||(48532337-48532648)
chr4 (404-519)||(39398115-39398233)
chr4 (404-519)||(39400003-39400121)
[»] chr5 (2 HSPs)
chr5 (21-333)||(17049493-17049804)
chr5 (390-675)||(11631957-11632245)
[»] scaffold0430 (1 HSPs)
scaffold0430 (21-333)||(443-754)
[»] chr1 (5 HSPs)
chr1 (354-519)||(3814018-3814186)
chr1 (357-520)||(3811185-3811351)
chr1 (170-328)||(16437096-16437248)
chr1 (436-519)||(32703524-32703609)
chr1 (614-654)||(34946489-34946529)
[»] chr8 (1 HSPs)
chr8 (85-291)||(39376927-39377132)
[»] chr2 (2 HSPs)
chr2 (404-520)||(43141582-43141701)
chr2 (139-311)||(39534101-39534272)
[»] chr3 (3 HSPs)
chr3 (404-519)||(41406695-41406813)
chr3 (404-519)||(41408185-41408303)
chr3 (599-656)||(25739182-25739239)
[»] scaffold0048 (2 HSPs)
scaffold0048 (390-519)||(79485-79616)
scaffold0048 (389-467)||(80897-80974)
[»] chr6 (1 HSPs)
chr6 (280-333)||(6625034-6625087)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 21 - 333
Target Start/End: Complemental strand, 48532648 - 48532337
Alignment:
Q  21 aaaaagcatcgaaattgttacctgacaaatagagaagcagccgcagtctaagttagcaggaaggacgtgaacagtgttgtgaagaagtgagatagcgaga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48532648 aaaaagcatcgaaattgttacctgacaaatagagaagcagccgcagtctaagttagcaggaaggacgtgaacaatgttgtgaagaagtgagatagcgaga 48532549  T
Q  121 aaacctaagatccaaaggataaaaacgtctttttgggttagtaatccgctggacaaaaagttgtcccccactaaagtggtggacaaaaaagtggttactt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48532548 aaacctaagatccaaaggataaaaacgtctttttgggttagtaatccgctggacaaaaagttgtcccccactaaagtggtggacaaaaaagtggttactt 48532449  T
Q  221 gtcctgtccttgattatttattttgtgttgtcctttttcgttttaataaatcaaacgcggtacaaatatttttgtcctgtccagtcccttaaattttaac 320  Q
    ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48532448 gt-gagtccttgattatttattttgtgttgtcctttttcgttttaataaatcaaacgcggtgcaaatatttttgtcctgtccagtcccttaaattttaac 48532350  T
Q  321 aaaacaaacgcac 333  Q
    |||||||||||||    
T  48532349 aaaacaaacgcac 48532337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 404 - 519
Target Start/End: Complemental strand, 39398233 - 39398115
Alignment:
Q  404 caaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaact---taggaaaaatcagatcacttctaactctgtagct 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||| ||||| ||| | |||||||||||| |||||    
T  39398233 caaaataactctgtaataaaactattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaaccagttgacttctaactctatagct 39398134  T
Q  501 gtgagttaatctcctaaca 519  Q
    |||||||||||||||||||    
T  39398133 gtgagttaatctcctaaca 39398115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 404 - 519
Target Start/End: Complemental strand, 39400121 - 39400003
Alignment:
Q  404 caaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaact---taggaaaaatcagatcacttctaactctgtagct 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||| ||||| ||| | |||||||||||| |||||    
T  39400121 caaaataactctgtaataaaactattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaaccagttgacttctaactctatagct 39400022  T
Q  501 gtgagttaatctcctaaca 519  Q
    |||||||||||||||||||    
T  39400021 gtgagttaatctcctaaca 39400003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 333
Target Start/End: Complemental strand, 17049804 - 17049493
Alignment:
Q  21 aaaaagcatcgaaattgttacctgacaaatagagaagcagccgcagtctaagttagcaggaaggacgtgaacagtgttgtgaagaagtgagatagcgaga 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  17049804 aaaaagcatcgaaattgttacctgacaaatagagaagcagccgcagtc-aatttagcaggaaggatgtgaacagttttgtgaagaagtgagacagcgaga 17049706  T
Q  121 aaacctaagatccaaaggataaaaacgtctttttgggttagtaatccgctggacaaaaagttgtcccccactaaagtggtggacaaaaaagtggttactt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17049705 aaacctaagatccaaaggataaaaacgtctttttgggttagtaatccgctggacaaaaagttgtccccaactaaagtggtggacaaaaaagtggttactt 17049606  T
Q  221 gtcctgtccttgattatttattttgtgttgtcctttttcgttttaataaatcaaacgcggtacaaatatttttgtcctgtccagtcccttaaattttaac 320  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||| |||    
T  17049605 gtcttgtccttgattatttattttgtgctgtcctttttcgttttaataaatcaaacgcggtacaaatatttttgttttgtccagtgccttaaatttgaac 17049506  T
Q  321 aaaacaaacgcac 333  Q
    |||||||||||||    
T  17049505 aaaacaaacgcac 17049493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 390 - 675
Target Start/End: Complemental strand, 11632245 - 11631957
Alignment:
Q  390 tagtttaaatctgccaaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaactt---aggaaaaatcagatcactt 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| | ||||    
T  11632245 tagtttaaatctgccaaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaacttgctaggaaaaatcagttgactt 11632146  T
Q  487 ctaactctgtagctgtgagttaatctcctaacaacttgacttgatctctttcacatcttgtctttgagatttgtaagactcaatgtattagtcttcgcaa 586  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11632145 ctaactctatagctgtgagttaatctcctaacaacttgacttgatctctttcacatcttgtctttgagatttgtaagactcaatgtattagtcttcgcaa 11632046  T
Q  587 gttacgcgccatccatttgggtcttgtaagactcgagatattactctccgcaagttgcgtgcggaggatatcggaattacgccaaaaat 675  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11632045 gctgcgcgccatccatttgggtcttgtaagactcgagatattactctccgcaagttgcgtgcggaggatatcggaattacgccaaaaat 11631957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 21 - 333
Target Start/End: Original strand, 443 - 754
Alignment:
Q  21 aaaaagcatcgaaattgttacctgacaaatagagaagcagccgcagtctaagttagcaggaaggacgtgaacagtgttgtgaagaagtgagatagcgaga 120  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||| |||||||||||| |||||||||||| ||| | |||||    
T  443 aaaaagcatcgaaattgttacctgacaaatagagaagctgccgcagtc-aatttagcaggaaagacgtgaacagttttgtgaagaagtcagacaacgaga 541  T
Q  121 aaacctaagatccaaaggataaaaacgtctttttgggttagtaatccgctggacaaaaagttgtcccccactaaagtggtggacaaaaaagtggttactt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  542 aaacctaagatccaaaggataaaaacgtctttttgggttagtaatccgctggacaaaaagttgtccccaactaaagtggtggacaaaaaagtggttactt 641  T
Q  221 gtcctgtccttgattatttattttgtgttgtcctttttcgttttaataaatcaaacgcggtacaaatatttttgtcctgtccagtcccttaaattttaac 320  Q
    ||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  642 gtcccatccttgattatttattttgtgctgtcctttttcgttttaataaatcaaacgcggtacaaatatttttgtcctatccactcccttaaattttaac 741  T
Q  321 aaaacaaacgcac 333  Q
    |||||||| ||||    
T  742 aaaacaaatgcac 754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 354 - 519
Target Start/End: Complemental strand, 3814186 - 3814018
Alignment:
Q  354 tgtttatatatagataaacacagttgacnnnnnnnctagtttaaatctgccaaaataactctgtaataaaactattaatgatagaattaactctaataaa 453  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3814186 tgtttatatatagataaacacagttgacaaaaaaactagtttaaatctgccaaaataactctgtaataaaactattaatgacagaattaactctaataaa 3814087  T
Q  454 aaacttattaact---taggaaaaatcagatcacttctaactctgtagctgtgagttaatctcctaaca 519  Q
    |||||||||||||   ||| ||||| ||| | |||||||||||| ||||||||||||||||||||||||    
T  3814086 aaacttattaacttgctagtaaaaaccagttgacttctaactctatagctgtgagttaatctcctaaca 3814018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 357 - 520
Target Start/End: Complemental strand, 3811351 - 3811185
Alignment:
Q  357 ttatatatagataaacacagttgacnnnnnnnctagtttaaatctgccaaaataactctgtaataaaactattaatgatagaattaactctaataaaaaa 456  Q
    ||||||||||| |||||||||||||       ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  3811351 ttatatatagaaaaacacagttgacaaaaaaactagtttaaatctgccaaaataactctgttataaaactattaatgacagaattaactctaataaaaaa 3811252  T
Q  457 cttattaact---taggaaaaatcagatcacttctaactctgtagctgtgagttaatctcctaacaa 520  Q
    ||||||||||   ||| ||||| ||| | |||||||||||| |||||||||||||||||||||||||    
T  3811251 cttattaacttgctagtaaaaaccagttgacttctaactctatagctgtgagttaatctcctaacaa 3811185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 170 - 328
Target Start/End: Original strand, 16437096 - 16437248
Alignment:
Q  170 tggacaaaaagttgtcccccactaaagtggtggacaaaaaagtggttacttgtcctgtccttgattatttattttgtgttgtcctttttcgttttaataa 269  Q
    ||||||||||||||||||| ||||| |   || ||||||||| || || ||||||||||     ||| || ||||||| |||||||||| ||||| ||||    
T  16437096 tggacaaaaagttgtccccaactaatgca-tgaacaaaaaagcggatagttgtcctgtc-----ttacttcttttgtgctgtccttttttgtttttataa 16437189  T
Q  270 atcaaacgcggtacaaatatttttgtcctgtccagtcccttaaattttaacaaaacaaa 328  Q
    |||||| || ||||| ||||||||||||||||||||||||||  |||||||||| ||||    
T  16437190 atcaaaggcagtacagatatttttgtcctgtccagtcccttattttttaacaaatcaaa 16437248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 436 - 519
Target Start/End: Complemental strand, 32703609 - 32703524
Alignment:
Q  436 agaattaactctaataaaaaacttattaactt---aggaaaaatcagatcacttctaactctgtagctgtgagttaatctcctaaca 519  Q
    ||||||||||||||||||||||| ||||||||   || ||||| ||| | |||||||||| | ||||||||||||||||||||||||    
T  32703609 agaattaactctaataaaaaact-attaacttgctagtaaaaaccagttgacttctaactgtatagctgtgagttaatctcctaaca 32703524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 654
Target Start/End: Original strand, 34946489 - 34946529
Alignment:
Q  614 aagactcgagatattactctccgcaagttgcgtgcggagga 654  Q
    ||||||||||| |||| ||||||||||||||| ||||||||    
T  34946489 aagactcgagaaattagtctccgcaagttgcgagcggagga 34946529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 85 - 291
Target Start/End: Original strand, 39376927 - 39377132
Alignment:
Q  85 acgtgaacagtgttgtgaagaagtgagatagcgagaaaacctaagatccaaaggataaaaacgtctttttgggttagtaatccgctggacaaaaagttgt 184  Q
    ||||||||||| || |||  |||||||  || |||||||| ||  ||| ||||||||||||||| |||||   ||||||||| ||||||  |||||||||    
T  39376927 acgtgaacagtattatgacaaagtgaggaagtgagaaaacatattatctaaaggataaaaacgtatttttaatttagtaatctgctggattaaaagttgt 39377026  T
Q  185 cccccactaaagtggtggacaaaaaagtggttacttgtcctgtccttgattatttattttgtgttgtcctttttcgttttaataaatcaaacgcggtaca 284  Q
    |||| |||||||||||||||||||||| || ||||| ||| ||||||| ||||||||||||||||||||||| |  | |||| |||||||||||||||||    
T  39377027 ccccaactaaagtggtggacaaaaaagcggctacttatccagtccttggttatttattttgtgttgtcctttct-ttattaacaaatcaaacgcggtaca 39377125  T
Q  285 aatattt 291  Q
    |||||||    
T  39377126 aatattt 39377132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 404 - 520
Target Start/End: Complemental strand, 43141701 - 43141582
Alignment:
Q  404 caaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaact---taggaaaaatcagatcacttctaactctgtagct 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||| ||||| ||| | |||||||||||| |||||    
T  43141701 caaaataactctgtaataaaactattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaaccagttgacttctaactctatagct 43141602  T
Q  501 gtgagttaatctcctaacaa 520  Q
    ||||||||||||||||||||    
T  43141601 gtgagttaatctcctaacaa 43141582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 139 - 311
Target Start/End: Complemental strand, 39534272 - 39534101
Alignment:
Q  139 ataaaaacgtctttttgggttagtaatccgctggacaaaaagttgtcccccactaaagtggtggacaaaaaagtggttacttgtcctgtccttgattatt 238  Q
    |||||||||| |||||   |||||||| || ||||||||||||||||||| |||||||||||||||||||||| || ||||||||| ||| ||| |||||    
T  39534272 ataaaaacgtatttttaatttagtaattcgttggacaaaaagttgtccccaactaaagtggtggacaaaaaagcggctacttgtcccgtctttggttatt 39534173  T
Q  239 tattttgtgttgtcctttttcgttttaataaatcaaacgcggtacaaatatttttgtcctgtccagtccctta 311  Q
    |||||||||  ||| |||||  ||| || |||||||||||| |||||||| |||||| | ||||| |||||||    
T  39534172 tattttgtgccgtcattttt-ttttaaacaaatcaaacgcgttacaaatacttttgttcggtccaatccctta 39534101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 404 - 519
Target Start/End: Complemental strand, 41406813 - 41406695
Alignment:
Q  404 caaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaact---taggaaaaatcagatcacttctaactctgtagct 500  Q
    |||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||   ||| ||||| ||| | |||||||||||| |||||    
T  41406813 caaaataattctgtaataaaattattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaaccagttgacttctaactctatagct 41406714  T
Q  501 gtgagttaatctcctaaca 519  Q
    |||||||||||||||||||    
T  41406713 gtgagttaatctcctaaca 41406695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 404 - 519
Target Start/End: Complemental strand, 41408303 - 41408185
Alignment:
Q  404 caaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaact---taggaaaaatcagatcacttctaactctgtagct 500  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||   ||| ||||| ||| | |||||||||||| |||||    
T  41408303 caaaataactccgtagtaaaactattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaaccagttgacttctaactctatagct 41408204  T
Q  501 gtgagttaatctcctaaca 519  Q
    |||||||||||||||||||    
T  41408203 gtgagttaatctcctaaca 41408185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 656
Target Start/End: Original strand, 25739182 - 25739239
Alignment:
Q  599 ccatttgggtcttgtaagactcgagatattactctccgcaagttgcgtgcggaggata 656  Q
    |||||||||||   |||||||||| | |||| ||||||||||||||||||||||||||    
T  25739182 ccatttgggtcccataagactcgataaattagtctccgcaagttgcgtgcggaggata 25739239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 390 - 519
Target Start/End: Complemental strand, 79616 - 79485
Alignment:
Q  390 tagtttaaatctgccaaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaact---taggaaaaatcagatcactt 486  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||   ||| ||||||||| | ||||    
T  79616 tagttcaaatctgtcaaaataactctgtaataaaactattaatgacataattaactctaataaaaaac-tattaacttgctagtaaaaatcagttgactt 79518  T
Q  487 ctaactctgtagctgtgagttaatctcctaaca 519  Q
    |||||| | ||| ||||||||||||||||||||    
T  79517 ctaactgtatagttgtgagttaatctcctaaca 79485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 389 - 467
Target Start/End: Complemental strand, 80974 - 80897
Alignment:
Q  389 ctagtttaaatctgccaaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaactt 467  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||    
T  80974 ctagttcaaatctgccaaaataactctgtaataaaactattaatgacataattaactctaataaaaaac-tattaactt 80897  T

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Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 6625087 - 6625034
Alignment:
Q  280 gtacaaatatttttgtcctgtccagtcccttaaattttaacaaaacaaacgcac 333  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  6625087 gtacaaatatttttgtcctgtccagtcccttatattttaacaaatcaaacgcac 6625034  T

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