View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11946_low_14 (Length: 238)

Name: NF11946_low_14
Description: NF11946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11946_low_14
NF11946_low_14
[»] chr8 (9 HSPs)
chr8 (17-217)||(2028012-2028212)
chr8 (17-217)||(1950784-1950984)
chr8 (17-198)||(2053814-2053995)
chr8 (17-217)||(2032548-2032748)
chr8 (17-197)||(2049809-2049989)
chr8 (17-217)||(10767186-10767387)
chr8 (17-197)||(2036623-2036803)
chr8 (17-197)||(2046000-2046180)
chr8 (97-144)||(2021932-2021979)
[»] chr4 (1 HSPs)
chr4 (32-221)||(48909060-48909249)
[»] chr2 (3 HSPs)
chr2 (99-144)||(28713715-28713760)
chr2 (99-144)||(28743615-28743660)
chr2 (99-144)||(28736989-28737034)
[»] chr1 (6 HSPs)
chr1 (94-143)||(16419767-16419816)
chr1 (94-137)||(16443101-16443144)
chr1 (94-149)||(16499340-16499395)
chr1 (94-143)||(16416588-16416637)
chr1 (94-143)||(16427507-16427556)
chr1 (94-143)||(16438211-16438260)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 2028212 - 2028012
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  2028212 gaataacatggcttgtgttgtaggctatctcatatttgtcaggttgatgatggaataaacttggtatcttctcaactcctccatcaacaagtccttttac 2028113  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccatttcccttttgtttgtagtg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2028112 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtagttcccatttcccttttgtttgtagtg 2028013  T
Q  217 g 217  Q
    |    
T  2028012 g 2028012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 1950784 - 1950984
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  1950784 gaataacatggcttgtgttgtaggctatctcatatttgtcaggttgatgatggaataaacttggtatcttctcaactcctccatcaacaagtccttttac 1950883  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccatttcccttttgtttgtagtg 216  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1950884 accagcttttgtttcatcaaatgctttacgttcattgaatgtagaatcaaggttaggcttggttgtattagtggttcccatttcacttttgtttgtagtg 1950983  T
Q  217 g 217  Q
    |    
T  1950984 g 1950984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 2053995 - 2053814
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2053995 gaataacattgcttgtattgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 2053896  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccatt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  2053895 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtatcaatggttcccatt 2053814  T

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Target: chr8; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 2032748 - 2032548
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    ||||| |||||||  ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  2032748 gaatagcatggctcatgttgttggctttctcatatttgtcaggttgatgatggaataagcttggtatcttcttaagtcctgcatcaacaagtccttttac 2032649  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccatttcccttttgtttgtagtg 216  Q
    |||||||||||||||||||||| ||||||||||| | ||| | |||||||||||||||||||||||    |||||||||||||  ||| |||||||||||    
T  2032648 accagcttttgtttcatcaaattctttgcgttcactcaatatagaatcaaggttaggcttggttgtgcctgtggttcccatttttcttatgtttgtagtg 2032549  T
Q  217 g 217  Q
    |    
T  2032548 g 2032548  T

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Target: chr8; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 2049989 - 2049809
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  2049989 gaataacatggcttgtgttgttggcttcctcatatttgtctggttgatgatggaataaggttggtatcttcttaactcctgcatcaacaagtccttttac 2049890  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccat 197  Q
    ||| ||||||||||||||||||||| |||| ||| | ||| | ||||||| ||||||||||||||||| | ||||||||||    
T  2049889 acctgcttttgtttcatcaaatgctatgcgctcactcaatatagaatcaaagttaggcttggttgtatcaatggttcccat 2049809  T

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Target: chr8; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 10767387 - 10767186
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    ||||||||||||||||||||| ||||| ||||||||| || |||||||||||||||||| | || ||||| | || |||| |||||||||||||||||||    
T  10767387 gaataacatggcttgtgttgtaggctaactcatatttatcaggttgatgatggaataaggtagggatcttgttaagtcctccatcaacaagtccttttac 10767288  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccatttcccttt-tgtttgtagt 215  Q
    |||||||||||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||| ||||||||||||||  |||| ||||||||||    
T  10767287 accagcttttgtttcatcaaatgctttgcgttcattcaataaagaatcaaggttaggcttggttgtatcagtggttcccatttttctttctgtttgtagt 10767188  T
Q  216 gg 217  Q
    ||    
T  10767187 gg 10767186  T

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Target: chr8; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 2036803 - 2036623
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||||  ||||||||     |||||| ||| || |||| |||||||||||||||| ||    
T  2036803 gaataacatggcttgtgttgttggctttctcgtatttgtcaggttgacaatggaatatctcaggtatcctcttaagtcctccatcaacaagtcctttcac 2036704  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccat 197  Q
    ||||| |||||||||||||||||||||||||||||| | |   ||||||||||||||| |||||| || | ||||||||||    
T  2036703 accagattttgtttcatcaaatgctttgcgttcattcattacagaatcaaggttaggcatggttgcatcaatggttcccat 2036623  T

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Target: chr8; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 2046180 - 2046000
Alignment:
Q  17 gaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttac 116  Q
    |||||||||||||||||||||||||| |||  |||||||| ||||||  ||||||||     |||||| ||| || |||| |||||||||||||||| ||    
T  2046180 gaataacatggcttgtgttgttggctttctggtatttgtcaggttgacaatggaatatctcaggtatcctcttaagtcctccatcaacaagtcctttcac 2046081  T
Q  117 accagcttttgtttcatcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccat 197  Q
    ||||| |||||||||||||||||||||||||||||| | |   ||||||||||||||| |||||| || | ||||||||||    
T  2046080 accagattttgtttcatcaaatgctttgcgttcattcattacagaatcaaggttaggcatggttgcatcaatggttcccat 2046000  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 2021979 - 2021932
Alignment:
Q  97 gcatcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 144  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||    
T  2021979 gcatcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 2021932  T

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Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 32 - 221
Target Start/End: Original strand, 48909060 - 48909249
Alignment:
Q  32 tgttgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtccttttacaccagcttttgtttc 131  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||  ||| ||||||||| ||||||||||| ||||||||||||    
T  48909060 tgttgtaggctatctcatttttgtctggttgatgatggaaaaagcttgggatcttcttaataccttcatcaacaaatccttttacactagcttttgtttc 48909159  T
Q  132 atcaaatgctttgcgttcattgaatgtggaatcaaggttaggcttggttgtattagtggttcccatttcccttttgtttgtagtggctct 221  Q
    ||||||||||||||||||| | ||| | ||||||| |||||||||||||||||  |||||||||||||  ||| | |||| |||||||||    
T  48909160 atcaaatgctttgcgttcactcaatatagaatcaaagttaggcttggttgtatccgtggttcccatttttcttatttttgcagtggctct 48909249  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 28713715 - 28713760
Alignment:
Q  99 atcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 144  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  28713715 atcaacaaggcctttaacaccagcttttgtttcatcaaatgctttg 28713760  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 28743615 - 28743660
Alignment:
Q  99 atcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 144  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  28743615 atcaacaaggcctttaacaccagcttttgtttcatcaaatgctttg 28743660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 28736989 - 28737034
Alignment:
Q  99 atcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 144  Q
    ||||||||| ||||| |||||||||||| |||||||||||||||||    
T  28736989 atcaacaaggcctttaacaccagcttttctttcatcaaatgctttg 28737034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 16419767 - 16419816
Alignment:
Q  94 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 143  Q
    |||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  16419767 cctgcatcaacaagtccttttacaccaaattttgtttcatcaaaagcttt 16419816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 16443101 - 16443144
Alignment:
Q  94 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaa 137  Q
    |||||||||||||||||||| ||||||  |||||||||||||||    
T  16443101 cctgcatcaacaagtcctttaacaccaagttttgtttcatcaaa 16443144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 16499395 - 16499340
Alignment:
Q  94 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaatgctttgcgttc 149  Q
    |||||||||||||||||||| ||||||  |||||| |||||||| |||||| ||||    
T  16499395 cctgcatcaacaagtcctttaacaccaagttttgtatcatcaaaagctttgagttc 16499340  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 16416588 - 16416637
Alignment:
Q  94 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 143  Q
    |||||||| ||||||||||| ||||||  ||||||||||||||| |||||    
T  16416588 cctgcatcgacaagtcctttaacaccaagttttgtttcatcaaaagcttt 16416637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 16427507 - 16427556
Alignment:
Q  94 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 143  Q
    |||||||||||||||||| | ||||||  ||||||||||||||| |||||    
T  16427507 cctgcatcaacaagtcctctaacaccaagttttgtttcatcaaaagcttt 16427556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 16438260 - 16438211
Alignment:
Q  94 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 143  Q
    |||||||||||||||||||| |||||   ||||||||||||||| |||||    
T  16438260 cctgcatcaacaagtcctttaacacccaattttgtttcatcaaaagcttt 16438211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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