View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11946_low_16 (Length: 232)
Name: NF11946_low_16
Description: NF11946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11946_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 10612602 - 10612829
Alignment:
| Q |
1 |
tgtaaagatttaggctagtttaatgtgtccattaactaaaatatcatattaactcttgatttccatttactcatcatttttataacttgagtaaactgat |
100 |
Q |
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| T |
10612602 |
tgtaaagatttaggctagtttaatgtgtccattaactaaaatatcatattaactcttgatttccatttactcatcatttttataacttgagtaaactgat |
10612701 |
T |
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| Q |
101 |
ccctatccctaagttgatcgggctcgaacaagtatgtcacaataaacacacaagaaacaaatatgtagcaatcttgtgtgtattatattgtccgcttaag |
200 |
Q |
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| T |
10612702 |
ccctatccctaagttgatcgggctcgaacaagtatgtcacaataaacatacaagaaacaaatatgtagcaatcttgtgtgtattatattgtccgcttaag |
10612801 |
T |
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| Q |
201 |
attgaacgtgattgaagctgaagtttga |
228 |
Q |
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| T |
10612802 |
attgaacatgattgaagctgaagtttga |
10612829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 10610186 - 10610246
Alignment:
| Q |
170 |
aatcttgtgtgtattatattgtccgcttaagattgaacgtgattgaagctgaagtttgatg |
230 |
Q |
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| T |
10610186 |
aatcttgtgtgtattatattgttagcttaagattgaacatgattgaagctgaagtttgatg |
10610246 |
T |
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