View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11946_low_3 (Length: 438)
Name: NF11946_low_3
Description: NF11946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11946_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 2063701 - 2064075
Alignment:
| Q |
19 |
tgttagatcttttaaagaaaaacttcatcatcgagtatgatagaatctagattgaagtagagatttttagtnnnnnnncataatcataaccatggtgtat |
118 |
Q |
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| T |
2063701 |
tgttacatcttttaaagaaaaattttatcatcgagtatgatagaatctagtttgaagtagagatttctagtaa------aaaaacataatcatggtgtat |
2063794 |
T |
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| Q |
119 |
tataattggcaagaaagaatacaaactacta---aaaacaaccc-ataatatttttgtatagagaaagnnnnnnnnttatccataattggtgcgcctttt |
214 |
Q |
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| T |
2063795 |
tataattggcaagaaagaatacaaactactactaaaaacaaccccataatatttttgtatagagagaaaaaaaaaattatccataattggtgcgtctttt |
2063894 |
T |
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| Q |
215 |
tacaagatccaatattataattccttgtatcatttcatctaatttaacattcctaaaaatattcatgatctaaatcccaaaatcaccatacctctactca |
314 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2063895 |
tacaagatccaatattataattccttgtatcttttcatctaatt-aacattcctaaaaatattcatgatctaaatcccaaaatcaccatacctctactca |
2063993 |
T |
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| Q |
315 |
tttgcattaattttgttctaaagcctcaaaggaaaatcaaaagtgaagccaaataacatagtagcaaatgtttacaaagatt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2063994 |
tttgcattaattttgttctaaagcctcaaaggaaaatcaaaagtgaagccaaataacatagtagcaaatgtttacaaagatt |
2064075 |
T |
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