View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11946_low_4 (Length: 375)

Name: NF11946_low_4
Description: NF11946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11946_low_4
NF11946_low_4
[»] chr4 (9 HSPs)
chr4 (74-358)||(6132488-6132771)
chr4 (42-200)||(27498963-27499108)
chr4 (110-198)||(38270455-38270543)
chr4 (132-200)||(47564496-47564564)
chr4 (35-135)||(2891174-2891274)
chr4 (110-171)||(3937678-3937739)
chr4 (162-198)||(2891134-2891170)
chr4 (156-198)||(18537987-18538029)
chr4 (159-200)||(18535298-18535339)
[»] chr7 (8 HSPs)
chr7 (22-203)||(24748341-24748522)
chr7 (74-198)||(21677796-21677920)
chr7 (83-196)||(21679759-21679872)
chr7 (130-199)||(27833125-27833194)
chr7 (129-199)||(44724329-44724399)
chr7 (108-198)||(39146434-39146524)
chr7 (132-198)||(22829105-22829171)
chr7 (166-203)||(11355005-11355042)
[»] chr6 (12 HSPs)
chr6 (26-198)||(22490415-22490587)
chr6 (74-196)||(10583884-10584006)
chr6 (110-198)||(13056949-13057037)
chr6 (110-198)||(3632406-3632494)
chr6 (111-198)||(24338941-24339028)
chr6 (130-200)||(3630354-3630424)
chr6 (110-198)||(13039509-13039597)
chr6 (107-199)||(13870818-13870910)
chr6 (74-137)||(24338883-24338946)
chr6 (157-201)||(26944923-26944967)
chr6 (162-198)||(12162024-12162060)
chr6 (121-171)||(20219939-20219989)
[»] chr1 (13 HSPs)
chr1 (74-199)||(50249009-50249134)
chr1 (111-198)||(17323785-17323872)
chr1 (132-197)||(25251749-25251814)
chr1 (115-211)||(17186605-17186701)
chr1 (132-200)||(25248988-25249056)
chr1 (132-201)||(31489724-31489793)
chr1 (158-201)||(18839306-18839349)
chr1 (166-200)||(31423403-31423437)
chr1 (157-206)||(15669891-15669940)
chr1 (157-198)||(18801068-18801109)
chr1 (164-200)||(16430821-16430857)
chr1 (166-198)||(17352797-17352829)
chr1 (166-206)||(50308045-50308085)
[»] chr2 (7 HSPs)
chr2 (74-198)||(14836971-14837094)
chr2 (74-196)||(34980014-34980136)
chr2 (110-201)||(15539947-15540038)
chr2 (129-198)||(11740009-11740078)
chr2 (132-198)||(22163419-22163485)
chr2 (120-198)||(3021839-3021917)
chr2 (167-198)||(38019884-38019915)
[»] chr3 (16 HSPs)
chr3 (74-201)||(36011524-36011651)
chr3 (74-196)||(1627116-1627238)
chr3 (91-199)||(5927217-5927325)
chr3 (110-196)||(28102471-28102558)
chr3 (122-198)||(7754063-7754139)
chr3 (132-200)||(28137765-28137833)
chr3 (130-200)||(28100530-28100600)
chr3 (110-201)||(43421883-43421974)
chr3 (76-198)||(53468890-53469002)
chr3 (112-198)||(8183163-8183249)
chr3 (158-198)||(43423960-43424000)
chr3 (157-200)||(25635120-25635163)
chr3 (157-199)||(562207-562249)
chr3 (157-198)||(13420686-13420727)
chr3 (157-198)||(25633231-25633272)
chr3 (164-200)||(23636725-23636761)
[»] chr5 (7 HSPs)
chr5 (74-195)||(2723698-2723811)
chr5 (74-198)||(24126579-24126700)
chr5 (76-181)||(17072619-17072724)
chr5 (74-171)||(10474758-10474856)
chr5 (132-198)||(695631-695697)
chr5 (139-200)||(20044755-20044816)
chr5 (110-198)||(20042770-20042858)
[»] chr8 (4 HSPs)
chr8 (110-198)||(26774978-26775066)
chr8 (110-201)||(27107367-27107458)
chr8 (132-199)||(33541860-33541927)
chr8 (115-198)||(15186164-15186247)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 74 - 358
Target Start/End: Complemental strand, 6132771 - 6132488
Alignment:
Q  74 gatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttct 173  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||||||||||||||    
T  6132771 gatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtaccctgaaaatcagccaccgattttcagcttccagaattccaatttct 6132672  T
Q  174 tcaattttgaggcactttcacaacaattataaagaaaaccttccttnnnnnnnnngtacaaagaaaacttgcatttcaaaccgtggcattaattgtacca 273  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||         |||||||||||||||||||||||||||||||||||||||||||||    
T  6132671 tcaattttgaggcactttcacaacaattataaagaaagccttccttaaaaaaaa-gtacaaagaaaacttgcatttcaaaccgtggcattaattgtacca 6132573  T
Q  274 tcgtcaattacaaatacaatgacaaagcgaaacagttaagaaaaaatgatatgcataaaactgtaataaaagagccacttattat 358  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6132572 ttgtcaattacaaatacaatgacaaagcgaaacagttaagaaaaaatgatatgcataaaactgtaaaaaaagagccacttattat 6132488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 27499108 - 27498963
Alignment:
Q  42 tgttttattctatgctatcaaaatagaacacagatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagcc 141  Q
    ||||||||| | |||| ||||||| |  ||| |||||||| ||||||| |||||||||||||||| ||||||||||| |||| |||| |||||||         
T  27499108 tgttttattttctgctgtcaaaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccctgccctgaaaat----- 27499014  T
Q  142 accaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 200  Q
            ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27499013 --------tcagcttccagaattccaatttcttcaattttgaggcactttcacaacaat 27498963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 38270455 - 38270543
Alignment:
Q  110 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    |||||||||  | ||||| ||||||||| |||||| |||||| |||  ||||||| |||||||||||||||||||||||||||||||||    
T  38270455 caaaatcggctatcgtgctttgaaaatcggccaccgattttctgctaccagaatttcaatttcttcaattttgaggcactttcacaaca 38270543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 47564564 - 47564496
Alignment:
Q  132 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 200  Q
    |||||| |||||| |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  47564564 aaaatcggccaccgattttctgcttccagaattctaatttcttcaattttgaggcactttcacaacaat 47564496  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 2891274 - 2891174
Alignment:
Q  35 acgtttatgttttattctatgctatcaaaatagaacacagatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaa 134  Q
    |||||| ||||||||| | |||| ||||||| |  ||| |||||||| ||||||| |||||||||||||| | ||||||||||| ||||||||| |||||    
T  2891274 acgtttctgttttattttctgctgtcaaaatcggccaccgatttttgccgaacctgaagctcaaataaaataggtcaaaatcggccaccgtgccctgaaa 2891175  T
Q  135 a 135  Q
    |    
T  2891174 a 2891174  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 3937678 - 3937739
Alignment:
Q  110 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaattt 171  Q
    ||||||||| ||||| ||| |||||||| |||||| |||||| |||||||||||||||||||    
T  3937678 caaaatcggccaccgagccctgaaaatcggccaccgattttctgctttcagaattccaattt 3937739  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 2891170 - 2891134
Alignment:
Q  162 attccaatttcttcaattttgaggcactttcacaaca 198  Q
    |||||||||||||||||||||||||||||||||||||    
T  2891170 attccaatttcttcaattttgaggcactttcacaaca 2891134  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 18537987 - 18538029
Alignment:
Q  156 ttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    ||||||| | ||||||||||||||||||| |||||||||||||    
T  18537987 ttcagaacttcaatttcttcaattttgagtcactttcacaaca 18538029  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 18535298 - 18535339
Alignment:
Q  159 agaattccaatttcttcaattttgaggcactttcacaacaat 200  Q
    |||| ||||||||||||||| ||||| |||||||||||||||    
T  18535298 agaactccaatttcttcaatattgagtcactttcacaacaat 18535339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 24748522 - 24748341
Alignment:
Q  22 taggcccgaaaaaacgtttatgttttattctatgctatcaaaatagaacacagatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtca 121  Q
    |||| ||||||| |||||| ||||||||| | |||| ||||||| |  ||| ||| |||| ||||||| |||||||||||||||| ||||||||||||||    
T  24748522 tagggccgaaaatacgtttctgttttattttctgctgtcaaaattggccaccgatctttgccgaacctgaagctcaaataaaacaggtcaaaatcggtca 24748423  T
Q  122 ccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaattat 203  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||| ||||||||||||| ||||    
T  24748422 ccgtgccctgaaaatcagccaccgattttcagcttccagaattctaattttttcaattttgagtcactttcacaacatttat 24748341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 21677920 - 21677796
Alignment:
Q  74 gatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttct 173  Q
    |||||||| ||||||| |||||||||||||||| || |||||| | ||| ||||| |||||||| |||||| ||||||||||| ||| ||||||||||||    
T  21677920 gatttttgccgaacctgaagctcaaataaaacaggttaaaatcagccactgtgccctgaaaatcggccaccgattttcagcttccaggattccaatttct 21677821  T
Q  174 tcaattttgaggcactttcacaaca 198  Q
    |||||||||||||||||||||||||    
T  21677820 tcaattttgaggcactttcacaaca 21677796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 196
Target Start/End: Complemental strand, 21679872 - 21679759
Alignment:
Q  83 cgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttg 182  Q
    ||||||| |||||||||||||||| ||||||||||| |||| |||| |  ||||| |||||| || |||||||| ||||||||||||||||| | |||||    
T  21679872 cgaacctgaagctcaaataaaacaggtcaaaatcggccaccatgccctacaaatcggccaccgatgttcagcttccagaattccaatttcttaatttttg 21679773  T
Q  183 aggcactttcacaa 196  Q
    ||||||||||||||    
T  21679772 aggcactttcacaa 21679759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 27833125 - 27833194
Alignment:
Q  130 tgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 199  Q
    |||||||| |||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||||||    
T  27833125 tgaaaatcggccaccgattttctgcttccagaattctaatttcttcaattttgaggcactttcacaacaa 27833194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 44724399 - 44724329
Alignment:
Q  129 ttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 199  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||| |||||||||||||||| ||||||||||    
T  44724399 ttgaaaatcggccaccgattttcagcttccagaatttcaattttttcaattttgaggcacgttcacaacaa 44724329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 39146434 - 39146524
Alignment:
Q  108 gtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    ||||||||||| |||||  || ||||||||  |||||  ||||| |||| || |||||||||||||||||||||||| |||||||||||||    
T  39146434 gtcaaaatcggccaccgaaccctgaaaatcgaccaccggttttctgcttccaaaattccaatttcttcaattttgagtcactttcacaaca 39146524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 22829105 - 22829171
Alignment:
Q  132 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    |||||| |||||  ||||||  ||| ||||||||||||||||||||||||||| |||||||||||||    
T  22829105 aaaatcggccactgattttctacttccagaattccaatttcttcaattttgagtcactttcacaaca 22829171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 11355042 - 11355005
Alignment:
Q  166 caatttcttcaattttgaggcactttcacaacaattat 203  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  11355042 caatttcttcaattttgagtcactttcacaacagttat 11355005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 22490587 - 22490415
Alignment:
Q  26 cccgaaaaaacgtttatgttttattctatgctatcaaaatagaacacagatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgt 125  Q
    |||||||| |||||| ||||||||| | ||||||||||||    ||| ||||| || ||||||| |||||||||||||||| ||||||||||| ||||||    
T  22490587 cccgaaaatacgtttctgttttattttctgctatcaaaatcagccaccgatttatgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgt 22490488  T
Q  126 gccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    ||| |||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  22490487 gccctgaaaatcggccatcgattttcagctttcagaattctaatttcttcaattttgaggcactttcataaca 22490415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 10584006 - 10583884
Alignment:
Q  74 gatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttct 173  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||| ||| | ||| |||||||   |||||  |||||||||| ||||||||||||||||    
T  10584006 gatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccactgcgccctgaaaatggaccaccggttttcagcttccagaattccaatttct 10583907  T
Q  174 tcaattttgaggcactttcacaa 196  Q
    |||||||| ||||||||||||||    
T  10583906 tcaattttaaggcactttcacaa 10583884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 13057037 - 13056949
Alignment:
Q  110 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    ||||||||| ||||| ||| |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  13057037 caaaatcggccaccgagccctgaaaatcggccaccaattttctgcttccagaattccaatttcttcaattttgaggcactttcacaaca 13056949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 3632406 - 3632494
Alignment:
Q  110 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    ||||||||| |||||||| ||||||||| | || | ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3632406 caaaatcggccaccgtgctttgaaaatcgggcatcgattttcagcttccagaattccaatttcttcaattttgaggcactttcacaaca 3632494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 24338941 - 24339028
Alignment:
Q  111 aaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    |||||||| | ||||||| |||||||| |||||| ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||    
T  24338941 aaaatcggcctccgtgccctgaaaatcggccaccgattttcatcttccagaatttcaatttcttcaattttgaggcactttcacaaca 24339028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 3630354 - 3630424
Alignment:
Q  130 tgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 200  Q
    |||||||| |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  3630354 tgaaaatcggccaccgattttcagcttctagaattccaatttcttcaattttgaggcactttcacaacaat 3630424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 13039597 - 13039509
Alignment:
Q  110 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    ||||||||| ||||| ||| |||||||| ||||||  ||||| |||| ||||||| |||||||||||||||||||||||||||||||||    
T  13039597 caaaatcggccaccgagccctgaaaatcggccaccggttttctgcttccagaatttcaatttcttcaattttgaggcactttcacaaca 13039509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 13870818 - 13870910
Alignment:
Q  107 tgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 199  Q
    |||||||||||| |||||  || ||||||||  ||||| |||||| |||| || ||||||||||||||||||||| |||||||||||||||||    
T  13870818 tgtcaaaatcggccaccgaaccctgaaaatcgaccaccgattttctgcttccaaaattccaatttcttcaattttaaggcactttcacaacaa 13870910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 24338883 - 24338946
Alignment:
Q  74 gatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatc 137  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  24338883 gatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaaatc 24338946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 26944967 - 26944923
Alignment:
Q  157 tcagaattccaatttcttcaattttgaggcactttcacaacaatt 201  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||    
T  26944967 tcagaactccaatttcttcaattttgagtcactttcacaacaatt 26944923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 12162024 - 12162060
Alignment:
Q  162 attccaatttcttcaattttgaggcactttcacaaca 198  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12162024 attccaatttctttaattttgaggcactttcacaaca 12162060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 20219989 - 20219939
Alignment:
Q  121 accgtgccttgaaaatcagccaccaattttcagctttcagaattccaattt 171  Q
    |||||||| |||||||| |||||| ||||||||||| || |||||||||||    
T  20219989 accgtgccctgaaaatcggccaccgattttcagcttccataattccaattt 20219939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 74 - 199
Target Start/End: Original strand, 50249009 - 50249134
Alignment:
Q  74 gatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttct 173  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||||  || ||||||||||| ||||||||||||||||    
T  50249009 gatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaaatcagcggccgattttcagcttccagaattccaatttct 50249108  T
Q  174 tcaattttgaggcactttcacaacaa 199  Q
    ||||||||||||||||||||||||||    
T  50249109 tcaattttgaggcactttcacaacaa 50249134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 17323872 - 17323785
Alignment:
Q  111 aaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    |||||||| ||||| ||| |||||||| | |||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||    
T  17323872 aaaatcggccaccgagccctgaaaatcggtcaccgattttctacttccagaattccaatttcttcaattttgaggcactttcacaaca 17323785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 25251749 - 25251814
Alignment:
Q  132 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaac 197  Q
    |||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  25251749 aaaatcggccaccgattttctgcttccagaattccaatttcttcaattttgaggcactttcacaac 25251814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 17186605 - 17186701
Alignment:
Q  115 tcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaattataaagaaaa 211  Q
    |||| ||||| ||| ||||||||||||||| |||||| |||| |||| || ||||||||||||||||||| | |||||||||||| ||| |||||||    
T  17186605 tcggccaccgagccctgaaaatcagccaccgattttctgcttccagattttcaatttcttcaattttgagtcgctttcacaacaaatatgaagaaaa 17186701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 25248988 - 25249056
Alignment:
Q  132 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 200  Q
    |||||| |||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  25248988 aaaatcggccaccgattttctgcttccagaattccaatttcttcaattttgaggcactatcacaacaat 25249056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 31489793 - 31489724
Alignment:
Q  132 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaatt 201  Q
    |||||| ||| ||||||||| |||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  31489793 aaaatcggcccccaattttctgcttccagaattccaatttcttcaattttaaggcactttcgcaacaatt 31489724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 18839349 - 18839306
Alignment:
Q  158 cagaattccaatttcttcaattttgaggcactttcacaacaatt 201  Q
    |||||||||||||| |||||||||||||||||||||||| ||||    
T  18839349 cagaattccaatttattcaattttgaggcactttcacaataatt 18839306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 31423403 - 31423437
Alignment:
Q  166 caatttcttcaattttgaggcactttcacaacaat 200  Q
    ||||||||||||||||||| |||||||||||||||    
T  31423403 caatttcttcaattttgagtcactttcacaacaat 31423437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 15669891 - 15669940
Alignment:
Q  157 tcagaattccaatttcttcaattttgaggcactttcacaacaattataaa 206  Q
    |||||| |||||||||||||||||| ||  |||||||||||| |||||||    
T  15669891 tcagaactccaatttcttcaattttaagttactttcacaacatttataaa 15669940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 18801068 - 18801109
Alignment:
Q  157 tcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    |||||| ||||||| ||||||||||||| |||||||||||||    
T  18801068 tcagaactccaattccttcaattttgagtcactttcacaaca 18801109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 16430857 - 16430821
Alignment:
Q  164 tccaatttcttcaattttgaggcactttcacaacaat 200  Q
    |||||||| |||||||||||| |||||||||||||||    
T  16430857 tccaatttattcaattttgagtcactttcacaacaat 16430821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 17352829 - 17352797
Alignment:
Q  166 caatttcttcaattttgaggcactttcacaaca 198  Q
    ||||||||||||||||||| |||||||||||||    
T  17352829 caatttcttcaattttgagtcactttcacaaca 17352797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 50308045 - 50308085
Alignment:
Q  166 caatttcttcaattttgaggcactttcacaacaattataaa 206  Q
    |||||||| |||||||||| ||||||||||||||| |||||    
T  50308045 caatttctccaattttgagtcactttcacaacaatgataaa 50308085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 14837094 - 14836971
Alignment:
Q  74 gatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttct 173  Q
    |||||||| ||||||| |||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||||||||| |||||||| |||||||    
T  14837094 gatttttgccgaacctgaagctcaaataaaacatgtcaaaatcggccaccgtgccctgaaaa-cggccaccaattttcagcttccagaattctaatttct 14836996  T
Q  174 tcaattttgaggcactttcacaaca 198  Q
    |||||||||||||||||||||||||    
T  14836995 tcaattttgaggcactttcacaaca 14836971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 74 - 196
Target Start/End: Original strand, 34980014 - 34980136
Alignment:
Q  74 gatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttct 173  Q
    |||||||| | ||||||||||||||||||| || ||||||||||| ||||||| | | |||||| |||||| |||||||||||  ||||||| |||||||    
T  34980014 gatttttgccaaacctaaagctcaaataaagcaggtcaaaatcggccaccgtgtcctaaaaatcggccaccgattttcagcttctagaattctaatttct 34980113  T
Q  174 tcaattttgaggcactttcacaa 196  Q
    |||||||||||||| ||||||||    
T  34980114 tcaattttgaggcattttcacaa 34980136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 15539947 - 15540038
Alignment:
Q  110 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaatt 201  Q
    ||||||||| ||||| |||||||||||| |||| | |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15539947 caaaatcggccaccgagccttgaaaatcggccatcgattttctgcttccagaattccaatttcttcaattttgaggcactttcacaacaatt 15540038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 11740009 - 11740078
Alignment:
Q  129 ttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11740009 ttgaaaatcggccaccgattttcaactttcagaattccaatttcttcaattttgaggcactttcacaaca 11740078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 22163419 - 22163485
Alignment:
Q  132 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22163419 aaaatcggccaccgattttcagcttccagaattccaatttcttcaattttgaggcactttcacaaca 22163485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 3021917 - 3021839
Alignment:
Q  120 caccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    ||||| ||| |||||||| |||||  |||| | |||| |||||||||||||||||||||||||||||||||||||||||    
T  3021917 caccgagccctgaaaatcggccacggatttcctgcttccagaattccaatttcttcaattttgaggcactttcacaaca 3021839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 198
Target Start/End: Complemental strand, 38019915 - 38019884
Alignment:
Q  167 aatttcttcaattttgaggcactttcacaaca 198  Q
    ||||||||||||||||||||||||||||||||    
T  38019915 aatttcttcaattttgaggcactttcacaaca 38019884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 36011651 - 36011524
Alignment:
Q  74 gatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttct 173  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||| |||||||||||||||||  |||||| ||||||| ||| |||| |||||||||||    
T  36011651 gatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccttgaaaattggccaccgattttcaccttccagatttccaatttct 36011552  T
Q  174 tcaattttgaggcactttcacaacaatt 201  Q
    ||||||||||||||||||||||||||||    
T  36011551 tcaattttgaggcactttcacaacaatt 36011524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 74 - 196
Target Start/End: Original strand, 1627116 - 1627238
Alignment:
Q  74 gatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttct 173  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||| ||| ||| | |||||||| |||||| ||||||||||| ||||||||||||||||    
T  1627116 gatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccactgtgtcctgaaaatcggccaccgattttcagcttccagaattccaatttct 1627215  T
Q  174 tcaattttgaggcactttcacaa 196  Q
    |||||||||||||||||||||||    
T  1627216 tcaattttgaggcactttcacaa 1627238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 5927217 - 5927325
Alignment:
Q  91 aagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactt 190  Q
    |||||||||||||||| ||||||||||| ||||||||  ||||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||||    
T  5927217 aagctcaaataaaacaggtcaaaatcggccaccgtgctctgaaaatcagccaccgattttcagcttccaaaattccaatttcttcaattttaaggcactt 5927316  T
Q  191 tcacaacaa 199  Q
    |||||||||    
T  5927317 tcacaacaa 5927325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 28102471 - 28102558
Alignment:
Q  110 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattcc-aatttcttcaattttgaggcactttcacaa 196  Q
    ||||||||| |||||  ||||||||||||||| || |||||| |||||||||||||| ||||| ||||||||||||||||||||||||    
T  28102471 caaaatcggccaccgaaccttgaaaatcagcccccgattttctgctttcagaattccaaatttattcaattttgaggcactttcacaa 28102558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 7754139 - 7754063
Alignment:
Q  122 ccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    ||||||| |||||||| |||| | ||||| ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  7754139 ccgtgccctgaaaatcggccagcgatttttagcttccagaattccaatttcttcaattttgagccactttcacaaca 7754063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 28137765 - 28137833
Alignment:
Q  132 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 200  Q
    |||||| |||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  28137765 aaaatcggccaccgattttctacttccagaattccaatttcttcaattttgaggcactttcacaacaat 28137833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 28100530 - 28100600
Alignment:
Q  130 tgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 200  Q
    |||||||| |||| | ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  28100530 tgaaaatcggccatcgattttctacttccagaattccaatttcttcaattttgaggcactttcacaacaat 28100600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 43421883 - 43421974
Alignment:
Q  110 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaatt 201  Q
    ||||||||| ||||||   ||||||||| ||||   |||||| |||  | ||||||||||||||||||||||||||||||||||||||||||    
T  43421883 caaaatcggccaccgtagtttgaaaatcggccatttattttctgctacctgaattccaatttcttcaattttgaggcactttcacaacaatt 43421974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 53468890 - 53469002
Alignment:
Q  76 tttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttc 175  Q
    |||||| ||||||| ||||||||||||||   ||||||||||| ||||||||| |||||||| ||||          ||||  ||||||| |||||||||    
T  53468890 tttttgccgaacctgaagctcaaataaaaatggtcaaaatcggccaccgtgccctgaaaatcggcca----------gcttatagaattctaatttcttc 53468979  T
Q  176 aattttgaggcactttcacaaca 198  Q
    |||||||||||||||||||||||    
T  53468980 aattttgaggcactttcacaaca 53469002  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 8183163 - 8183249
Alignment:
Q  112 aaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    ||||||| ||||||||  ||||||||   |||  |||||| ||| |||||||| |||||||||||||||||||||||||||||||||    
T  8183163 aaatcggccaccgtgctctgaaaatcgatcactgattttctgctatcagaatttcaatttcttcaattttgaggcactttcacaaca 8183249  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 43423960 - 43424000
Alignment:
Q  158 cagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43423960 cagaattccaatttcttcaattttgaggcactttcacaaca 43424000  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 25635163 - 25635120
Alignment:
Q  157 tcagaattccaatttcttcaattttgaggcactttcacaacaat 200  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  25635163 tcagaactccaatttcttcaattttgagtcactttcacaacaat 25635120  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 562207 - 562249
Alignment:
Q  157 tcagaattccaatttcttcaattttgaggcactttcacaacaa 199  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  562207 tcagaactccaatttcttcaattttgagtcactttcacaacaa 562249  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 13420686 - 13420727
Alignment:
Q  157 tcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  13420686 tcagaactccaatttcttcaattttgagtcactttcacaaca 13420727  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 25633272 - 25633231
Alignment:
Q  157 tcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    |||||| ||||||||||||||||||||  |||||||||||||    
T  25633272 tcagaactccaatttcttcaattttgaatcactttcacaaca 25633231  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 23636761 - 23636725
Alignment:
Q  164 tccaatttcttcaattttgaggcactttcacaacaat 200  Q
    |||||||||| |||||||||| |||||||||||||||    
T  23636761 tccaatttctccaattttgagtcactttcacaacaat 23636725  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 2723811 - 2723698
Alignment:
Q  74 gatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttct 173  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||| |||||        || ||||||||||| ||||||||||||||||    
T  2723811 gatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaa--------ccgattttcagcttccagaattccaatttct 2723720  T
Q  174 tcaattttgaggcactttcaca 195  Q
    ||||||||||||||||||||||    
T  2723719 tcaattttgaggcactttcaca 2723698  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 24126700 - 24126579
Alignment:
Q  74 gatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttct 173  Q
    |||||||| |||| || ||||||||| |||||| ||||||||||| ||||||||   || || | ||||||||||||||||||  |||||||||||||||    
T  24126700 gatttttgccgaatctgaagctcaaacaaaacaggtcaaaatcggccaccgtgc---gacaaccggccaccaattttcagcttctagaattccaatttct 24126604  T
Q  174 tcaattttgaggcactttcacaaca 198  Q
    ||||||||||| |||||||||||||    
T  24126603 tcaattttgagacactttcacaaca 24126579  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 17072724 - 17072619
Alignment:
Q  76 tttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttc 175  Q
    |||||| ||||| | |||||||||||||||| ||||||||||| ||| || ||||||||||| |||||| |||||||||||||| ||||||||||||||     
T  17072724 tttttgccgaacttgaagctcaaataaaacaggtcaaaatcggccactgtaccttgaaaatcggccaccgattttcagctttcaaaattccaatttcttt 17072625  T
Q  176 aatttt 181  Q
    ||||||    
T  17072624 aatttt 17072619  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 10474758 - 10474856
Alignment:
Q  74 gatttttgacgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaa-ttttcagctttcagaattccaattt 171  Q
    |||||||  ||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||| |||||||| |||||||||| ||||||||||||||    
T  10474758 gattttttccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaaatcggccaccaatttttcagcttccagaattccaattt 10474856  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 695697 - 695631
Alignment:
Q  132 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    |||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  695697 aaaatcggccaccaattttcagcttccagaatttcaatttcttcaattttgaggcactttcacaaca 695631  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 20044816 - 20044755
Alignment:
Q  139 gccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 200  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||| |||||||||||||||    
T  20044816 gccaccgattttctgcttccagaattccaatttcttcaattttgagtcactttcacaacaat 20044755  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 20042858 - 20042770
Alignment:
Q  110 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    |||| |||| ||||||||| |||||||| |||| ||||||||  ||| |||||||||||||||||||||||| |  |||||||||||||    
T  20042858 caaattcggccaccgtgccctgaaaatcggccatcaattttcttcttccagaattccaatttcttcaattttaaatcactttcacaaca 20042770  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 26775066 - 26774978
Alignment:
Q  110 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    |||||||||||| |||||  |||||||| |||||| |||||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  26775066 caaaatcggtcaacgtgctctgaaaatcggccaccgattttctgctaccagaattccaatttcttcaattttgaggcactttcacaaca 26774978  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 27107367 - 27107458
Alignment:
Q  110 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaatt 201  Q
    ||||||||| |||| |||  |||||||| |||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  27107367 caaaatcggccaccatgctctgaaaatcggccatcgattttcagcttccagaattctaatttcttcaattttgaggcactttcacaacaatt 27107458  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 33541860 - 33541927
Alignment:
Q  132 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 199  Q
    |||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  33541860 aaaatcggccaccgattttcagcttccagaattccaatttctttaattttgaggcactttcacaacaa 33541927  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 15186164 - 15186247
Alignment:
Q  115 tcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 198  Q
    |||| ||||| ||| ||||||||  | ||| |||||  |||| || |||||| ||||||||||||||||| |||||||||||||    
T  15186164 tcggccaccgagccctgaaaatcgacgaccgattttttgcttccataattcctatttcttcaattttgagtcactttcacaaca 15186247  T

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