View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11946_low_6 (Length: 351)
Name: NF11946_low_6
Description: NF11946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11946_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 42851612 - 42851278
Alignment:
| Q |
1 |
cagttaactattttgaaaactcagtttggttcaaactattgcattatggttcagttttgacacagtcttggtctaaactgaactttgcccatccctaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42851612 |
cagttaactattttgaaaactcagtttggttcaaactattgcattatggttcagttttgacacagtcttggtctaaactgaactttgcccatccctaatt |
42851513 |
T |
|
| Q |
101 |
attacatccaaaatttagacttccaattcaacctagaatnnnnnnnttaaccgctaaagtttaactgctttttgaacttgttacaaaagagttatattta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42851512 |
attacatccaaaatttagacttccaattcaacctagaataaaaaaattaaccgctaaagtttaactgctttttgaacttgttacaaaagagttatatttg |
42851413 |
T |
|
| Q |
201 |
tctaatttcaaatcaattactaactcgagggaaagggtccatttaannnnnnngaaattattttctgttttcatttgtatagagtgaagataaaaatgat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42851412 |
tctaatttcaaatcaattactaactcgagggaaagggtccatttactttttttgaaattattttatgttttcatttgtatagagtgaagataaaaatgat |
42851313 |
T |
|
| Q |
301 |
agctaaacaactaccaatttatttgttcttagtat |
335 |
Q |
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||||||| ||||||||||||||||||||||||||| |
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| T |
42851312 |
agctaaaaaactaccaatttatttgttcttagtat |
42851278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 52421887 - 52421782
Alignment:
| Q |
1 |
cagttaactattttgaaaac----tcagtttggttcaaactattgcattatggttcagtt-----ttgacacagtcttggtctaaactgaactttgccca |
91 |
Q |
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| T |
52421887 |
cagttaactattttgaaaaccagttcagtttggttcaaactattgcattatggttcagttcagttttgacacagttttggtctaaactgaactttgccca |
52421788 |
T |
|
| Q |
92 |
tcccta |
97 |
Q |
| |
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|||||| |
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| T |
52421787 |
tcccta |
52421782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 38256048 - 38255947
Alignment:
| Q |
2 |
agttaactattttgaaaac----tcagtttggttcaaactattgcattat-----ggttcagttttgacacagtcttggtctaaactgaactttgcccat |
92 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||||||| |||||| |||||||| ||| || |||||| ||||||||| |||| |
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| T |
38256048 |
agttaactattttgaaaaccagttcagtttggtttaaactattgcattatggctcggttcaattttgacatagttttcatctaaagtgaactttgtccat |
38255949 |
T |
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| Q |
93 |
cc |
94 |
Q |
| |
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|| |
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| T |
38255948 |
cc |
38255947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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