View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11947_high_1 (Length: 913)

Name: NF11947_high_1
Description: NF11947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11947_high_1
NF11947_high_1
[»] chr7 (21 HSPs)
chr7 (21-903)||(24862761-24863645)
chr7 (21-275)||(24874923-24875177)
chr7 (344-878)||(24834261-24834783)
chr7 (344-671)||(24900039-24900366)
chr7 (482-671)||(24754630-24754819)
chr7 (737-878)||(24899820-24899961)
chr7 (755-878)||(24754912-24755035)
chr7 (781-875)||(24697227-24697321)
chr7 (756-877)||(24807195-24807316)
chr7 (781-872)||(24537368-24537459)
chr7 (755-878)||(24842954-24843077)
chr7 (756-878)||(24854905-24855027)
chr7 (781-878)||(24896170-24896267)
chr7 (185-281)||(24834106-24834207)
chr7 (756-875)||(24826931-24827050)
chr7 (490-545)||(24849780-24849835)
chr7 (246-293)||(24874874-24874921)
chr7 (787-875)||(24727131-24727219)
chr7 (561-629)||(24843197-24843265)
chr7 (374-425)||(24754522-24754573)
chr7 (756-806)||(24716035-24716085)
[»] chr8 (2 HSPs)
chr8 (752-878)||(38612672-38612798)
chr8 (596-703)||(38612534-38612641)


Alignment Details
Target: chr7 (Bit Score: 830; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 830; E-Value: 0
Query Start/End: Original strand, 21 - 903
Target Start/End: Original strand, 24862761 - 24863645
Alignment:
Q  21 ggcggaacctacgatgcactttattaaaaccgtaaattatcaacaacaaaaaattatggaatagaaatagcatacctgttttgtaatggtgatactaacg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  24862761 ggcggaacctacgatgcactttattaaaaccgtaaattatcaacaacaaaaaattatgaaatagaaatagcatacctattttgtaatggtgatactaacg 24862860  T
Q  121 atcttttatgat--ggaatttgcacggccacttggaataacaaaatcgaactcatacattaaatgtcacacaagaaaaataaattgacttgcattttaaa 218  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24862861 atcttttatgatttggaatttgcacggccacttggaataacaaaatcgaactcatacattaaatgtcacacaagaaaaataaattgacttgcattttaaa 24862960  T
Q  219 tcctaacaaacacccaaatgaattcccattacaaacagaaggacaggaaacatacataaaataaatattccgtaaaatggagacaaatttacttatgcaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  24862961 tcctaacaaacacccaaatgaattcccattacaaacagaaggacaggaaacatacatgaaataaatattccgtaaaatggagacaaatttacttattcaa 24863060  T
Q  319 aatataggctaggacggcaagtaccgtcttcacaatactaagtatagccaacaatgcagccacaaagttgtaattttgtttcaaaaatttgataagccat 418  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24863061 aatataggctaggactgcaagtaccgtcttcacaatactaagtatagccagcaatgcagcaacaaagttgtaattttgtttcaaaaatttgataagccat 24863160  T
Q  419 tctagacaatacgcggattcatgccacaatatttttaagatccttatgatgaaaaacgccccagagtaattgttcaaatcatcaaccagtttaacataac 518  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24863161 tctagacaatacgtggattcatgccacaatatttttaagatccttatgatgaaaaacgccccagagtaattgttcaaatcatcaaccagtttaacataac 24863260  T
Q  519 tggtatcaagtatcccagaatcaattccagacacaatcgtacgaaaaaactctttcaacttctcattactcatattagtatgatccacaatgatgttctt 618  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24863261 tggaatcaagtatcccagaatcaattccagacacaatcgtacgaaaaaactctttcaacttctcattactcatattagtatgatccacaatgatgttctt 24863360  T
Q  619 ttccttaagaaaatttagatcagccgaacaacaaatcaatccattgaaaatcagcgctgacaaagtaaatttgccgttgggactattcaggccatggtcc 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24863361 ttccttaagaaaatttagatcagccgaacaacaaatcaatccattgaaaatcagcgctgacaaagtaaatttgccgttgggactattcaggccatggtcc 24863460  T
Q  719 tctattgcaacggaaatggaagaacttttccccttctttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgca 818  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24863461 tctattgcaacggaaatggaagaacttttccccttctttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgca 24863560  T
Q  819 actgttcaattttcagtttcccattttcaaacttaaaatgaaagtccaaacctttcacttggcttactgtcacattcctatgctt 903  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24863561 actgttcaattttcagtttcccattgtcaaacttaaaatgaaagtccaaacctttcacttggcttactgtcgcattcctatgctt 24863645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 24875177 - 24874923
Alignment:
Q  21 ggcggaacctacgatgcactttattaaaaccgtaaattatcaacaacaaaaaattatggaatagaaatagcatacctgttttgtaatggtgatactaacg 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  24875177 ggcggaacctacgatacactttattaaaaccgtaaattatcaacaacaaaaaattatgaaatagaaatagcatacctgttttgtaatggtgatacttacg 24875078  T
Q  121 atcttttatgatggaatttgcacggccacttggaataacaaaatcgaactcatacattaaatgtcacacaagaaaaataaattgacttgcattttaaatc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24875077 atcttttatgatggaatttgcacggccacttggaataacaaaatcgaactcatacattaaatgtcacacaagaaaaataaattgacttgcattttaaatc 24874978  T
Q  221 ctaacaaacacccaaatgaattcccattacaaacagaaggacaggaaacatacat 275  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24874977 ctaacaaacacccaaatgaattcccattacaaacagaaggacaagaaacatacat 24874923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 344 - 878
Target Start/End: Original strand, 24834261 - 24834783
Alignment:
Q  344 gtcttcacaatactaagtatagccaacaatgcagccacaaagttgtaattttgtttcaaaaatttgataagccattctagacaatacgcggattcatgcc 443  Q
    |||| ||||| |||||||| ||| | || |||||| ||||||||||||| || ||||||||| |||||||||| |||||||||| |   |||   |||||    
T  24834261 gtctgcacaacactaagtagagcaagcagtgcagcaacaaagttgtaatcttctttcaaaaacttgataagccgttctagacaacatatggaaaaatgcc 24834360  T
Q  444 acaatatttttaagatccttatgatgaaaaacgccccagagtaattgttcaaatcatcaaccagtttaacataactggtatcaagtatcccagaatcaat 543  Q
    || ||| ||| ||||||||||  ||||||||| |  ||||||| |||||||| |||| ||| |||| ||||||||||| ||||| |||||||| |||||     
T  24834361 acgataatttcaagatccttaatatgaaaaacacatcagagtagttgttcaattcattaactagttgaacataactggaatcaactatcccaggatcaac 24834460  T
Q  544 tccagacacaatcgtacgaaaaaactctttcaacttctcattactcatattagtatgatccacaatgatgttcttttccttaagaaaatttagatcagcc 643  Q
    |||| ||   || ||||| ||||||||||||||||   |||||||||| || ||||||||||||||||| ||||||||||| |||||| ||| |||||||    
T  24834461 tccaaacgacatggtacggaaaaactctttcaactcaccattactcatcttcgtatgatccacaatgattttcttttccttcagaaaaattacatcagcc 24834560  T
Q  644 gaacaacaaatcaatccattgaaaatcagcgctgacaaagtaaatttgccgttgggactattcaggccatggtcctctattgcaacggaaatggaagaac 743  Q
    || |||||||| || |||| |||||||| ||| ||| |||||||||||||| |||||||| | ||||  |||       ||      |||   |||||||    
T  24834561 gagcaacaaattaacccatggaaaatcaacgcagacgaagtaaatttgccgatgggactagtgaggctctgg------gtt------gaagacgaagaac 24834648  T
Q  744 ttttccccttctttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccatt 843  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||||||||  |    
T  24834649 ttttcccattctttttatgatgctcccaaacaatgacattgcgccactttgctttcgttgtttctgtgatatgcaactgtgcaatttcgagtttccccat 24834748  T
Q  844 ttcaaacttaaaatgaaagtccaaacctttcactt 878  Q
    |   ||||||||||  |||||||||||||||||||    
T  24834749 tctgaacttaaaattgaagtccaaacctttcactt 24834783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 344 - 671
Target Start/End: Complemental strand, 24900366 - 24900039
Alignment:
Q  344 gtcttcacaatactaagtatagccaacaatgcagccacaaagttgtaattttgtttcaaaaatttgataagccattctagacaatacgcggattcatgcc 443  Q
    |||| ||||| |||||||| ||| | || |||||| ||||||||||| |||||||||||||| || | || ||||||||||  ||||  | |   ||| |    
T  24900366 gtctgcacaacactaagtagagcaaccagtgcagctacaaagttgtagttttgtttcaaaaagtttacaacccattctagatgatacatgcagagatggc 24900267  T
Q  444 acaatatttttaagatccttatgatgaaaaacgccccagagtaattgttcaaatcatcaaccagtttaacataactggtatcaagtatcccagaatcaat 543  Q
      |||||||| |||||  | | ||||||||||||| | |||||||||||||| |||||||||| |||||||||||| | ||||| |||| ||  |||||     
T  24900266 gaaatattttaaagattttcaagatgaaaaacgcctcggagtaattgttcaactcatcaaccattttaacataactagaatcaactatctcacgatcaac 24900167  T
Q  544 tccagacacaatcgtacgaaaaaactctttcaacttctcattactcatattagtatgatccacaatgatgttcttttccttaagaaaatttagatcagcc 643  Q
    |||  ||  ||||||||||||||| |||| ||||| ||||||  |||| ||   |||||| |||||||| ||||||||||| ||||  || | ||||||     
T  24900166 tccgaacgaaatcgtacgaaaaaaatcttgcaactcctcattgttcatcttcaaatgatctacaatgatattcttttccttgagaagcttcacatcagct 24900067  T
Q  644 gaacaacaaatcaatccattgaaaatca 671  Q
      |||||||||||| |||||||||||||    
T  24900066 tcacaacaaatcaaaccattgaaaatca 24900039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 482 - 671
Target Start/End: Original strand, 24754630 - 24754819
Alignment:
Q  482 gagtaattgttcaaatcatcaaccagtttaacataactggtatcaagtatcccagaatcaattccagacacaatcgtacgaaaaaactctttcaacttct 581  Q
    ||||||| |||||| |||||||| | |||||||||||| | ||||| |||||||  ||||| |||| ||   || | | | |||||||||| ||||| ||    
T  24754630 gagtaatcgttcaagtcatcaacaattttaacataacttgaatcaactatcccaagatcaactccaaacgacatggaatgtaaaaactcttccaactcct 24754729  T
Q  582 cattactcatattagtatgatccacaatgatgttcttttccttaagaaaatttagatcagccgaacaacaaatcaatccattgaaaatca 671  Q
    |||||||||| ||   ||||||||||||||| ||||| ||||||||||  || | |||||| | |||||||||||| |||| ||||||||    
T  24754730 cattactcatcttcaaatgatccacaatgatattcttgtccttaagaagcttcacatcagcagcacaacaaatcaacccatcgaaaatca 24754819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 737 - 878
Target Start/End: Complemental strand, 24899961 - 24899820
Alignment:
Q  737 gaagaacttttccccttctttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtt 836  Q
    |||||||| ||||  ||||||||||||||||||||  |||| ||||||| |||||||||||| || |||| ||| |||||||| ||| ||||||  | ||    
T  24899961 gaagaactcttccaattctttttatgatgctcccaagcaattacattgcaccactttgctttcgtagtttttgtaatatgcaattgtgcaatttcaaatt 24899862  T
Q  837 tcccattttcaaacttaaaatgaaagtccaaacctttcactt 878  Q
    ||||||| ||||||||||| |  || ||||||||| ||||||    
T  24899861 tcccattctcaaacttaaactcgaaatccaaacctctcactt 24899820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 755 - 878
Target Start/End: Original strand, 24754912 - 24755035
Alignment:
Q  755 tttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaa 854  Q
    |||||||||||||||||  |||||||||||| |||||| ||||||||||||| ||| || |  |||||| |||||| |||| |||| |||||||| ||||    
T  24754912 tttttatgatgctcccaagcaatgacattgcaccacttagcttttgttgtttttgttatctctaactgtgcaatttccagtgtccccttttcaaagttaa 24755011  T
Q  855 aatgaaagtccaaacctttcactt 878  Q
    | | |||||||| |||||| ||||    
T  24755012 agtaaaagtccatacctttaactt 24755035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 781 - 875
Target Start/End: Original strand, 24697227 - 24697321
Alignment:
Q  781 attgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaaatgaaagtccaaacctttca 875  Q
    ||||| |||||| |||||||||||||  ||||||||||| ||||||||||  |||||||| |||||||||||||| ||||||| ||||| |||||    
T  24697227 attgcaccacttggcttttgttgttttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaagtgaaagttcaaacatttca 24697321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 756 - 877
Target Start/End: Original strand, 24807195 - 24807316
Alignment:
Q  756 ttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaa 855  Q
    ||||||||||||||||  |||| | ||||||||||||||| || ||||||| |||||||||||   || ||||||  |||||||| ||||||||||||||    
T  24807195 ttttatgatgctcccaagcaatcatattgcgccactttgccttcgttgtttttgtgatatgcagtggtgcaatttgaagtttcccgttttcaaacttaaa 24807294  T
Q  856 atgaaagtccaaacctttcact 877  Q
     | ||||| ||||||| |||||    
T  24807295 ctcaaagttcaaacctctcact 24807316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 781 - 872
Target Start/End: Complemental strand, 24537459 - 24537368
Alignment:
Q  781 attgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaaatgaaagtccaaacctt 872  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||||||||  |||| ||| ||||||||||| || | |||||||| |||||    
T  24537459 attgcaccacttagcttttgttgtttttgtgatatgcaactgttcaatttcaagttcccccttttcaaacttgaatttaaagtccatacctt 24537368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 755 - 878
Target Start/End: Complemental strand, 24843077 - 24842954
Alignment:
Q  755 tttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaa 854  Q
    ||||||||||||||| |  |||||| |||| ||||||||||||| |||||||  |||||||| |||||| |||||| ||||||||| ||||  |||| ||    
T  24843077 tttttatgatgctccaaagcaatgaaattgagccactttgctttcgttgttttagtgatatgtaactgtgcaatttccagtttcccctttttgaactcaa 24842978  T
Q  855 aatgaaagtccaaacctttcactt 878  Q
    | | ||| ||||||||||| ||||    
T  24842977 agtaaaattccaaacctttaactt 24842954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 756 - 878
Target Start/End: Original strand, 24854905 - 24855027
Alignment:
Q  756 ttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaa 855  Q
    |||||||||| |||||  |||| | ||||| ||||||  ||||| |||||| |||||||||||  ||||||||||  |||| |||||||| |||||||||    
T  24854905 ttttatgatgttcccaagcaattatattgcaccacttatctttttttgtttttgtgatatgcagttgttcaatttcaagttccccattttgaaacttaaa 24855004  T
Q  856 atgaaagtccaaacctttcactt 878  Q
     | ||| ||||| ||||||||||    
T  24855005 gtaaaaatccaatcctttcactt 24855027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 781 - 878
Target Start/End: Original strand, 24896170 - 24896267
Alignment:
Q  781 attgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaaatgaaagtccaaacctttcactt 878  Q
    ||||| |||||| ||||||||||||| | |||||||||  ||||||||||  |||| |||||||| ||||||||| | ||| ||||| ||||||||||    
T  24896170 attgcaccacttagcttttgttgtttttatgatatgcagttgttcaatttcaagttccccattttgaaacttaaagtaaaaatccaatcctttcactt 24896267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 24834106 - 24834207
Alignment:
Q  185 cacacaagaaaaataaattgacttgcattttaaatcct---aacaa--acacccaaatgaattcccattacaaacagaaggacaggaaacatacataaaa 279  Q
    |||||||||||||| |||||||||||||||||| ||||    ||||  ||||||||||||||| | | | |||||||||||||| ||||||||||| |||    
T  24834106 cacacaagaaaaatcaattgacttgcattttaattcctctacacaaacacacccaaatgaattgctactccaaacagaaggacaagaaacatacatgaaa 24834205  T
Q  280 ta 281  Q
    ||    
T  24834206 ta 24834207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 756 - 875
Target Start/End: Original strand, 24826931 - 24827050
Alignment:
Q  756 ttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaa 855  Q
    ||||||||||||||||  |||| | ||| | |||||| |||||||| |||| |||||||||||  |||| |||||  ||  || | ||||||||||||||    
T  24826931 ttttatgatgctcccaagcaataagattacaccacttggcttttgtcgtttttgtgatatgcagttgtttaatttcaagagtctccttttcaaacttaaa 24827030  T
Q  856 atgaaagtccaaacctttca 875  Q
     | |||||||||||||||||    
T  24827031 gtaaaagtccaaacctttca 24827050  T

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Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 490 - 545
Target Start/End: Complemental strand, 24849835 - 24849780
Alignment:
Q  490 gttcaaatcatcaaccagtttaacataactggtatcaagtatcccagaatcaattc 545  Q
    |||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||    
T  24849835 gttcaaatcatcaaccagattaatataactggaatcaagtatccccgaatcaattc 24849780  T

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Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 24874921 - 24874874
Alignment:
Q  246 attacaaacagaaggacaggaaacatacataaaataaatattccgtaa 293  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  24874921 attacaaacagaaggacaggaaacatacatgaaataaatatttcgtaa 24874874  T

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Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 875
Target Start/End: Original strand, 24727131 - 24727219
Alignment:
Q  787 ccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaacttaaaatgaaagtccaaacctttca 875  Q
    |||||| | ||||||||| | ||||||||| | |||||||||||  ||||| || |||| ||||||||| | |||||||||||||||||    
T  24727131 ccacttggattttgttgtgtttgtgatatgtagctgttcaatttcaagtttgccctttttaaacttaaagtaaaagtccaaacctttca 24727219  T

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Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 561 - 629
Target Start/End: Complemental strand, 24843265 - 24843197
Alignment:
Q  561 gaaaaaactctttcaacttctcattactcatattagtatgatccacaatgatgttcttttccttaagaa 629  Q
    |||||||||||||||||| |||||||||||| ||   |||||||||||| || ||||| ||||||||||    
T  24843265 gaaaaaactctttcaactcctcattactcatcttcaaatgatccacaataatattcttctccttaagaa 24843197  T

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Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 425
Target Start/End: Original strand, 24754522 - 24754573
Alignment:
Q  374 gcagccacaaagttgtaattttgtttcaaaaatttgataagccattctagac 425  Q
    ||||| ||||||||||| |||||||||||||| ||||  |||||||||||||    
T  24754522 gcagcaacaaagttgtagttttgtttcaaaaacttgaagagccattctagac 24754573  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 756 - 806
Target Start/End: Original strand, 24716035 - 24716085
Alignment:
Q  756 ttttatgatgctcccatacaatgacattgcgccactttgcttttgttgttt 806  Q
    |||||||||| ||||| | ||| |||||||||||||||||||| |||||||    
T  24716035 ttttatgatgttcccaaaaaattacattgcgccactttgctttcgttgttt 24716085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 752 - 878
Target Start/End: Original strand, 38612672 - 38612798
Alignment:
Q  752 ttctttttatgatgctcccatacaatgacattgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattttcaaact 851  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||  ||||||||  ||   ||||    
T  38612672 ttctttttatgatgctcccaaacaatgacattgcgccaatttgctttcgttgtttctgtgatatgcaactgtgcaatttcgagtttccccattctgaact 38612771  T
Q  852 taaaatgaaagtccaaacctttcactt 878  Q
    ||||||  || ||||||||||||||||    
T  38612772 taaaattgaattccaaacctttcactt 38612798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 596 - 703
Target Start/End: Original strand, 38612534 - 38612641
Alignment:
Q  596 gtatgatccacaatgatgttcttttccttaagaaaatttagatcagccgaacaacaaatcaatccattgaaaatcagcgctgacaaagtaaatttgccgt 695  Q
    ||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |||||||| || |||| |||||||| ||| ||| ||||||||||||||     
T  38612534 gtatgatccacaatgattttcttttccttcagaaaaattacatcagccgagcaacaaattaacccatggaaaatcaacgcagacgaagtaaatttgccga 38612633  T
Q  696 tgggacta 703  Q
    ||||||||    
T  38612634 tgggacta 38612641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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