View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11947_high_12 (Length: 296)
Name: NF11947_high_12
Description: NF11947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11947_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 54472556 - 54472273
Alignment:
| Q |
8 |
atatctaacggtttctacatttgcaacaccatattgtagctacataagattcaaatttggatcctctaccgcgtcgactatggcaccatgcaaaagcttt |
107 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472556 |
atatcttacagtttctacatttgcaacaccatattgtagctacataagattcaaatttggatcctctaccgcgtcgactatggcaccatgcaaaagcttt |
54472457 |
T |
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| Q |
108 |
agaggatccatttctgatcnnnnnnntaagaataggctatgaatcattaattaattaa------------cttcctccattaactattctaaacttcata |
195 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
54472456 |
agaggatccatttctgatcaaaaaaataagaataggctatgaatcattaattaattaattaattaattagcttcccccattaactattctaaacttcata |
54472357 |
T |
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| Q |
196 |
acatgcttatttgcaaattcctattnnnnnnngaaataggagatatataaaaatatataccgtgtgctggagtagggtagtaat |
279 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472356 |
acatgcttatttgcaaattcctattaaaaaaagaaataggagatatataaaaatatataccgtgtgctggagtagggtagtaat |
54472273 |
T |
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