View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11947_high_16 (Length: 229)
Name: NF11947_high_16
Description: NF11947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11947_high_16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 32922880 - 32923103
Alignment:
| Q |
7 |
gtttggtggataaacgtatcacatatgtgacataatctatttcctcaagtctcacatataannnnnnnnagagtgattattaattcaataaaattaataa |
106 |
Q |
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| T |
32922880 |
gtttggtggataaacgtatcacatatgtgacataatctatttcctcaagtctcacatataattttttttagagtgattattaattcaataaaattaataa |
32922979 |
T |
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| Q |
107 |
ccacttgaccnnnnnnnntaaa-ttaataaccacttacaatagatagatcaaatgataagagacttgaagtatctggtttatggtttgattggaaaatcc |
205 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32922980 |
ccacttgaccaaaaaaataaaaattaataaccacttacaatagatagatcaaatgataagagacttgaagtatctggttaatggtttgattggaaaatcc |
32923079 |
T |
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| Q |
206 |
acgttgtatgctccacaaattttt |
229 |
Q |
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|||||||||||||||||||||||| |
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| T |
32923080 |
acgttgtatgctccacaaattttt |
32923103 |
T |
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