View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11947_high_4 (Length: 609)
Name: NF11947_high_4
Description: NF11947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11947_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 4e-83; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 413 - 592
Target Start/End: Complemental strand, 2811696 - 2811516
Alignment:
| Q |
413 |
atcaatgttttcctccacaaatcaaatggtacagtttgattcttgatataactgcaacaacatggattctgaacaagcttttatcatatgcatgggtaca |
512 |
Q |
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| T |
2811696 |
atcaatgttttcctcctcaaatcaaatggtacagtttgattcttgatataactgcaaccacatggattctgaacaaggttttatcatatgcatgggtaca |
2811597 |
T |
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| Q |
513 |
ttctgaaaaataaaatcaatattttgtttgttcttcctt-cctctaacaagatcagcttaaaaagagtaaaatcataaagc |
592 |
Q |
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| T |
2811596 |
ttctgaaaaataaaatcaatattttgtttgttcttccttccctctaataagatcagcttaaaaagagtaaaatcataaagc |
2811516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 156 - 371
Target Start/End: Complemental strand, 2811917 - 2811695
Alignment:
| Q |
156 |
aaatagattcaaagaaattgaacactgagaagtgagaggatgagagaagctttggtgtgtaaatttataggcaaggttgtgaatgactagttg-----tg |
250 |
Q |
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| T |
2811917 |
aaatagattcaaagaaattgaacactgagaagtgagaggctgagagaagctt-ggtgtgtcaatttataggcaaggttgtgaatgactagttggtctttg |
2811819 |
T |
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| Q |
251 |
gatatttactattagcaccaccttcttttaatacaccctctcataaggtgtttgtcttttaattatta---attgaataaagttagtgtctcacacaatt |
347 |
Q |
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| T |
2811818 |
gatatttactattagcaccaccgtctattaatacaccctctcataaggtacttgtcttttaattattattaattgaataaagttagtgtctcacacaatt |
2811719 |
T |
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| Q |
348 |
actctattaagcaacatagcatat |
371 |
Q |
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| T |
2811718 |
actctattaagaaacatagcatat |
2811695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 2812006 - 2811901
Alignment:
| Q |
17 |
cagagacttaattaaatactaggaatcatagaacaaatccatcatattgttgcagnnnnnnnctcatcaaatgattcattcaacaacgaaaatagattca |
116 |
Q |
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| T |
2812006 |
cagagacttaattaaatactaggaatcatggaacaaatccatcatattgttgcagtttttttctcatcaaatgatccattccataacacaaatagattca |
2811907 |
T |
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| Q |
117 |
aagaaa |
122 |
Q |
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|||||| |
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| T |
2811906 |
aagaaa |
2811901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 537 - 590
Target Start/End: Complemental strand, 2814203 - 2814150
Alignment:
| Q |
537 |
tgtttgttcttccttcctctaacaagatcagcttaaaaagagtaaaatcataaa |
590 |
Q |
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| T |
2814203 |
tgtttcttcttccttcctctaacaagatcagcttaaaaagagtaaaatcttaaa |
2814150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 2806514 - 2806471
Alignment:
| Q |
28 |
ttaaatactaggaatcatagaacaaatccatcatattgttgcag |
71 |
Q |
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| T |
2806514 |
ttaaatactaagaatcatggaacgaatccatcatattgttgcag |
2806471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 8132726 - 8132683
Alignment:
| Q |
28 |
ttaaatactaggaatcatagaacaaatccatcatattgttgcag |
71 |
Q |
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| T |
8132726 |
ttaaatactaggaatcatggaacgaatccatcgtattgttgcag |
8132683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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